Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
FAM178A	55719	broad.mit.edu	37	10	102684688	102684688	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNNM2	54805	broad.mit.edu	37	10	104679190	104679190	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120817659	120817659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128192613	128192613	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MGMT	4255	broad.mit.edu	37	10	131565073	131565073	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPYSL4	10570	broad.mit.edu	37	10	134018389	134018389	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135011911	135011911	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABI1	10006	broad.mit.edu	37	10	27112231	27112231	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNPO2L	79933	broad.mit.edu	37	10	75406722	75406722	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MMP20	9313	broad.mit.edu	37	11	102495964	102495964	+	Silent	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118948905	118948905	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCPS	28960	broad.mit.edu	37	11	126176504	126176504	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3C2A	5286	broad.mit.edu	37	11	17115836	17115836	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRGPRX1	259249	broad.mit.edu	37	11	18955715	18955715	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAT	847	broad.mit.edu	37	11	34489896	34489896	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872916	55872916	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57193147	57193147	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR56B4	196335	broad.mit.edu	37	11	6129404	6129404	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78433795	78433795	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106500253	106500253	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111758093	111758093	+	Silent	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HPD	3242	broad.mit.edu	37	12	122281692	122281692	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130912840	130912840	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RECQL	5965	broad.mit.edu	37	12	21627868	21627868	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22005388	22005388	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31648850	31648850	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50829280	50829280	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LETMD1	25875	broad.mit.edu	37	12	51442959	51442959	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52164425	52164425	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53677876	53677876	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR6C70	390327	broad.mit.edu	37	12	55863095	55863095	+	Silent	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6623746	6623746	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70932005	70932005	+	Missense_Mutation	SNP	G	A	A	rs113079289		TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72057170	72057170	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72680477	72680477	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72680639	72680639	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMPO	7112	broad.mit.edu	37	12	98925604	98925604	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67802415	67802415	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
REC8	9985	broad.mit.edu	37	14	24648917	24648917	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25043947	25043947	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51561002	51561002	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65197535	65197535	+	Silent	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf181	400223	broad.mit.edu	37	14	69262557	69262557	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf45	80127	broad.mit.edu	37	14	74489638	74489638	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS6KA5	9252	broad.mit.edu	37	14	91356957	91356957	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28467360	28467360	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48752456	48752456	+	Silent	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48787780	48787780	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SECISBP2L	9728	broad.mit.edu	37	15	49309824	49309824	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPP8	54878	broad.mit.edu	37	15	65790284	65790284	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72193566	72193566	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74315653	74315653	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	76994116	76994116	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MORF4L1	10933	broad.mit.edu	37	15	79187188	79187188	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83349915	83349915	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90348650	90348650	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF710	374655	broad.mit.edu	37	15	90611334	90611334	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91290711	91290711	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23116802	23116802	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
COG7	91949	broad.mit.edu	37	16	23445959	23445959	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23700964	23700964	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28878329	28878329	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
VKORC1	79001	broad.mit.edu	37	16	31102541	31102541	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57935276	57935276	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf11	146325	broad.mit.edu	37	16	613383	613383	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RLTPR	146206	broad.mit.edu	37	16	67679643	67679643	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69959346	69959346	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71483770	71483770	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74685992	74685992	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFPM1	161882	broad.mit.edu	37	16	88555534	88555534	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89345686	89345686	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPEP1	1800	broad.mit.edu	37	16	89702959	89702959	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMF1	64788	broad.mit.edu	37	16	919947	919947	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED9	55090	broad.mit.edu	37	17	17394774	17394774	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18035826	18035826	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LASP1	3927	broad.mit.edu	37	17	37026461	37026461	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42337895	42337895	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM25	7706	broad.mit.edu	37	17	54985878	54985878	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD51C	5889	broad.mit.edu	37	17	56774141	56774141	+	Silent	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72942918	72942918	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM65	201292	broad.mit.edu	37	17	73887267	73887267	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76079209	76079209	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACTG1	71	broad.mit.edu	37	17	79478446	79478446	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
IMPA2	3613	broad.mit.edu	37	18	11999053	11999053	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22806433	22806433	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31318937	31318937	+	Silent	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR88	126248	broad.mit.edu	37	19	33663289	33663289	+	Silent	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF829	374899	broad.mit.edu	37	19	37383113	37383113	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAF1	54623	broad.mit.edu	37	19	39877398	39877398	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
EBI3	10148	broad.mit.edu	37	19	4236932	4236932	+	Splice_Site	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45867687	45867687	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CGB7	94027	broad.mit.edu	37	19	49558229	49558229	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIH1D1	55011	broad.mit.edu	37	19	49950297	49950297	+	Missense_Mutation	SNP	A	G	G	rs17844886		TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALDH16A1	126133	broad.mit.edu	37	19	49972188	49972188	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56733066	56733066	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF324B	388569	broad.mit.edu	37	19	58966681	58966681	+	Silent	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF324	25799	broad.mit.edu	37	19	58982236	58982236	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10166548	10166548	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146201	111146201	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTTNBP2NL	55917	broad.mit.edu	37	1	112999502	112999502	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152187692	152187692	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154321348	154321348	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159842832	159842832	+	Silent	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160134114	160134114	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160389046	160389046	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160801216	160801216	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA2	1969	broad.mit.edu	37	1	16477395	16477395	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169677940	169677940	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17552363	17552363	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19449357	19449357	+	Silent	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLA2G2E	30814	broad.mit.edu	37	1	20248869	20248869	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203667472	203667472	+	Silent	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207109079	207109079	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf86	199990	broad.mit.edu	37	1	2125504	2125504	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22903038	22903038	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASAP3	55616	broad.mit.edu	37	1	23763959	23763959	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24392387	24392387	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf172	126695	broad.mit.edu	37	1	27277225	27277225	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTP4A2	8073	broad.mit.edu	37	1	32381498	32381498	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSF3R	1441	broad.mit.edu	37	1	36941192	36941192	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43804317	43804317	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HYI	81888	broad.mit.edu	37	1	43917920	43917920	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704303	52704303	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPAR3	23566	broad.mit.edu	37	1	85331472	85331472	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGAP29	9411	broad.mit.edu	37	1	94650459	94650459	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2315885	2315885	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNFX1	57169	broad.mit.edu	37	20	47888256	47888256	+	Silent	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52192283	52192283	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R3D	5509	broad.mit.edu	37	20	58514308	58514308	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADRM1	11047	broad.mit.edu	37	20	60883123	60883123	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61428545	61428545	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRYZL1	9946	broad.mit.edu	37	21	34994369	34994369	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
B3GALT5	10317	broad.mit.edu	37	21	41032664	41032664	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287678	16287678	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARVCF	421	broad.mit.edu	37	22	19961220	19961220	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36697582	36697582	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41553195	41553195	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLR3H	171568	broad.mit.edu	37	22	41928097	41928097	+	Splice_Site	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PMM1	5372	broad.mit.edu	37	22	41980552	41980552	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50563824	50563824	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11367379	11367379	+	Splice_Site	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163136571	163136571	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170062610	170062610	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
GAD1	2571	broad.mit.edu	37	2	171700564	171700564	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179566962	179566962	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18764244	18764244	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIF3L1	60491	broad.mit.edu	37	2	201760010	201760010	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211442223	211442223	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT1A1	54658	broad.mit.edu	37	2	234669219	234669219	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGT1A1	54658	broad.mit.edu	37	2	234669236	234669236	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32475710	32475710	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32656153	32656153	+	Silent	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32673877	32673877	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP4K3	8491	broad.mit.edu	37	2	39487881	39487881	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55544701	55544701	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80101245	80101245	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8919858	8919858	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CPSF3	51692	broad.mit.edu	37	2	9581956	9581956	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM111	55831	broad.mit.edu	37	3	10012301	10012301	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108273235	108273235	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121994736	121994736	+	Silent	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123046525	123046525	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136287647	136287647	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MRPS22	56945	broad.mit.edu	37	3	139065815	139065815	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141671502	141671502	+	Silent	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142499680	142499680	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NR2C2	7182	broad.mit.edu	37	3	15062406	15062406	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
P2RY13	53829	broad.mit.edu	37	3	151046556	151046556	+	Silent	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD28	23243	broad.mit.edu	37	3	15762530	15762530	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
GP5	2814	broad.mit.edu	37	3	194117570	194117570	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19575409	19575409	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38537926	38537926	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42687412	42687412	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47125299	47125299	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC51	79714	broad.mit.edu	37	3	48474335	48474335	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR6	11180	broad.mit.edu	37	3	49051674	49051674	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP19	10869	broad.mit.edu	37	3	49153998	49153998	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49929204	49929204	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ITIH3	3699	broad.mit.edu	37	3	52835110	52835110	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54420796	54420796	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
WNT5A	7474	broad.mit.edu	37	3	55504170	55504170	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120484008	120484008	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C4orf31	79625	broad.mit.edu	37	4	121958158	121958158	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071562	134071562	+	Silent	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP38	84640	broad.mit.edu	37	4	144127185	144127185	+	Splice_Site	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPY5R	4889	broad.mit.edu	37	4	164271624	164271624	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169167598	169167598	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHOX2B	8929	broad.mit.edu	37	4	41748140	41748140	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NMU	10874	broad.mit.edu	37	4	56471508	56471508	+	Silent	SNP	A	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784901	9784901	+	Silent	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110459882	110459882	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115833065	115833065	+	Silent	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118865646	118865646	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138654644	138654644	+	Silent	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf53	492311	broad.mit.edu	37	5	139508200	139508200	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140186836	140186836	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCTD16	57528	broad.mit.edu	37	5	143586786	143586786	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14492807	14492807	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176707662	176707662	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
B4GALT7	11285	broad.mit.edu	37	5	177034458	177034458	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNRNPAB	3182	broad.mit.edu	37	5	177637274	177637274	+	Splice_Site	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576343	33576343	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36976326	36976326	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56152428	56152428	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNPO1	3842	broad.mit.edu	37	5	72144225	72144225	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7817004	7817004	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PRDM1	639	broad.mit.edu	37	6	106547284	106547284	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf203	51250	broad.mit.edu	37	6	107365530	107365530	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
IL20RA	53832	broad.mit.edu	37	6	137325794	137325794	+	Silent	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143092722	143092722	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYTL3	94120	broad.mit.edu	37	6	159181706	159181706	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160483635	160483635	+	Silent	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H3A	8350	broad.mit.edu	37	6	26020953	26020953	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC44A4	80736	broad.mit.edu	37	6	31831441	31831441	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31919363	31919363	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PSMB8	5696	broad.mit.edu	37	6	32808759	32808759	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
BRD2	6046	broad.mit.edu	37	6	32945996	32945996	+	Silent	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
B3GALT4	8705	broad.mit.edu	37	6	33245680	33245680	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MDFI	4188	broad.mit.edu	37	6	41621154	41621154	+	Silent	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C6orf223	221416	broad.mit.edu	37	6	43970834	43970834	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
DST	667	broad.mit.edu	37	6	56325021	56325021	+	Missense_Mutation	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79655145	79655145	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82910359	82910359	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87970340	87970340	+	Silent	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100172746	100172746	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC17	10234	broad.mit.edu	37	7	102574512	102574512	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123599683	123599683	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133884160	133884160	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIPK2	28996	broad.mit.edu	37	7	139299121	139299121	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144320258	144320258	+	Splice_Site	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1527588	1527588	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4171955	4171955	+	Splice_Site	SNP	A	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44556935	44556935	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYTH3	9265	broad.mit.edu	37	7	6210831	6210831	+	Splice_Site	SNP	A	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ICA1	3382	broad.mit.edu	37	7	8260975	8260975	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94540651	94540651	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACN9	57001	broad.mit.edu	37	7	96810409	96810409	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TECPR1	25851	broad.mit.edu	37	7	97863074	97863074	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100146891	100146891	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTHRC1	115908	broad.mit.edu	37	8	104388153	104388153	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145161270	145161270	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
LPL	4023	broad.mit.edu	37	8	19818562	19818562	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
EIF4EBP1	1978	broad.mit.edu	37	8	37914710	37914710	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55541521	55541521	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62366715	62366715	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CRH	1392	broad.mit.edu	37	8	67089287	67089287	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70539485	70539485	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763236	77763236	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMOD1	7111	broad.mit.edu	37	9	100326379	100326379	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSTD2	158427	broad.mit.edu	37	9	100367863	100367863	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123232480	123232480	+	Missense_Mutation	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131329130	131329130	+	Silent	SNP	T	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2086985	2086985	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA1045	23349	broad.mit.edu	37	9	34976675	34976675	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
INSL4	3641	broad.mit.edu	37	9	5231710	5231710	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100532627	100532627	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
MSL3	10943	broad.mit.edu	37	X	11783848	11783848	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428141	135428141	+	Nonsense_Mutation	SNP	T	G	G			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44922802	44922802	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65242174	65242174	+	Silent	SNP	G	A	A			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70784470	70784470	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61544788	61544806	+	Frame_Shift_Del	DEL	CACAGGTGCCCGACACCGT	-	-	rs75764154	byFrequency;by1000genomes	TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114836462	114836462	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
AVIL	10677	broad.mit.edu	37	12	58197160	58197179	+	Splice_Site	DEL	ATTTCCTGCTGAAGTCTGCA	-	-			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176308405	176308406	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134493873	134493887	+	In_Frame_Del	DEL	GTTCCAGGAAGCAGC	-	-			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90955588	90955607	+	Splice_Site	DEL	ATGTGACCTATTGAATAATA	-	-			TCGA-DK-A1A7-01	TCGA-DK-A1A7-01									Somatic	Phase_I	Capture				Illumina GAIIx
