Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CCDC147	159686	broad.mit.edu	37	10	106209909	106209909	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATE1	11101	broad.mit.edu	37	10	123673374	123673374	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRE	5791	broad.mit.edu	37	10	129874929	129874929	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
VIM	7431	broad.mit.edu	37	10	17277345	17277345	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21117520	21117520	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MASTL	84930	broad.mit.edu	37	10	27459817	27459817	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28273125	28273125	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PITRM1	10531	broad.mit.edu	37	10	3197793	3197793	+	Silent	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37478443	37478443	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44112076	44112076	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63852251	63852251	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
AIFM2	84883	broad.mit.edu	37	10	71883680	71883680	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPOCK2	9806	broad.mit.edu	37	10	73826705	73826705	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75568098	75568098	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92617282	92617282	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LDHC	3948	broad.mit.edu	37	11	18451306	18451306	+	Silent	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19955347	19955347	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681643	55681643	+	Missense_Mutation	SNP	C	G	G	rs12786096		TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59245789	59245789	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C11orf66	220004	broad.mit.edu	37	11	61254053	61254053	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
POLA2	23649	broad.mit.edu	37	11	65034149	65034149	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
FGF3	2248	broad.mit.edu	37	11	69625371	69625371	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLPB	81570	broad.mit.edu	37	11	72145375	72145375	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAD52	5893	broad.mit.edu	37	12	1025522	1025522	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ISCU	23479	broad.mit.edu	37	12	108958094	108958094	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109654665	109654665	+	Silent	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109876422	109876422	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TAS2R43	259289	broad.mit.edu	37	12	11244751	11244751	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112664513	112664513	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PXN	5829	broad.mit.edu	37	12	120652697	120652697	+	Silent	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27067369	27067369	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARNTL2	56938	broad.mit.edu	37	12	27573406	27573406	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30833508	30833508	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32137616	32137616	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46318566	46318566	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49230568	49230568	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49722719	49722719	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51759233	51759233	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52163723	52163723	+	Silent	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57595667	57595667	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57603500	57603500	+	Missense_Mutation	SNP	C	A	A	rs113975567		TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72291701	72291701	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF828	283489	broad.mit.edu	37	13	115089879	115089879	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
IFT88	8100	broad.mit.edu	37	13	21157156	21157156	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
EBPL	84650	broad.mit.edu	37	13	50235171	50235171	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96513055	96513055	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
EVL	51466	broad.mit.edu	37	14	100607527	100607527	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102442048	102442048	+	Splice_Site	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105181636	105181636	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105410194	105410194	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRAPPC6B	122553	broad.mit.edu	37	14	39627491	39627491	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39783995	39783995	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPIL5	122769	broad.mit.edu	37	14	50074213	50074213	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50255908	50255908	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C14orf182	283551	broad.mit.edu	37	14	50472344	50472344	+	Silent	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ESR2	2100	broad.mit.edu	37	14	64727309	64727309	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65194411	65194411	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZDHHC22	283576	broad.mit.edu	37	14	77605820	77605820	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89168814	89168814	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92088132	92088132	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96752292	96752292	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22933811	22933811	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29393870	29393870	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34047305	34047305	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C15orf57	90416	broad.mit.edu	37	15	40856969	40856969	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43932621	43932621	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50152570	50152570	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF12	6938	broad.mit.edu	37	15	57565418	57565418	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
FAM96A	84191	broad.mit.edu	37	15	64385901	64385901	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
COQ7	10229	broad.mit.edu	37	16	19085285	19085285	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19621680	19621680	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNPS1	10921	broad.mit.edu	37	16	2312402	2312402	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CTF1	1489	broad.mit.edu	37	16	30910757	30910757	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF205	7755	broad.mit.edu	37	16	3170223	3170223	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLUAP1	23059	broad.mit.edu	37	16	3569975	3569975	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57063929	57063929	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DOK4	55715	broad.mit.edu	37	16	57508776	57508776	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57757006	57757006	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58292407	58292407	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72992824	72992824	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78458905	78458905	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80666970	80666970	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMG6	23293	broad.mit.edu	37	17	2202737	2202737	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRR	63826	broad.mit.edu	37	17	2222174	2222174	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRPV1	7442	broad.mit.edu	37	17	3494637	3494637	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MED24	9862	broad.mit.edu	37	17	38187864	38187864	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM99	147184	broad.mit.edu	37	17	38991464	38991464	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40330146	40330146	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62020202	62020202	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ASGR1	432	broad.mit.edu	37	17	7080605	7080605	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577085	7577085	+	Missense_Mutation	SNP	C	T	T	rs112431538		TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578188	7578188	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGSH	6448	broad.mit.edu	37	17	78188482	78188482	+	Silent	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C17orf59	54785	broad.mit.edu	37	17	8092491	8092491	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14516631	14516631	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15793238	15793238	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLVAP	83483	broad.mit.edu	37	19	17487865	17487865	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21606279	21606279	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF57	126295	broad.mit.edu	37	19	2918122	2918122	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDCD2L	84306	broad.mit.edu	37	19	34900411	34900411	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39001344	39001344	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
EID2B	126272	broad.mit.edu	37	19	40023151	40023151	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42848852	42848852	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CEACAM1	634	broad.mit.edu	37	19	43026092	43026092	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF575	284346	broad.mit.edu	37	19	44039832	44039832	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CBLC	23624	broad.mit.edu	37	19	45285644	45285644	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DMPK	1760	broad.mit.edu	37	19	46285508	46285508	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D17	79735	broad.mit.edu	37	19	50387619	50387619	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51361378	51361378	+	Silent	SNP	C	G	G	rs2739452		TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208542	53208542	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54802062	54802062	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54932504	54932504	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIR2DS4	3809	broad.mit.edu	37	19	55354367	55354367	+	Missense_Mutation	SNP	A	G	G	rs1130508		TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NLRP9	338321	broad.mit.edu	37	19	56243927	56243927	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56895710	56895710	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58438051	58438051	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58438339	58438339	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZBTB45	84878	broad.mit.edu	37	19	59028353	59028353	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9061174	9061174	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RTCD1	8634	broad.mit.edu	37	1	100732130	100732130	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTHFR	4524	broad.mit.edu	37	1	11861287	11861287	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD35	148741	broad.mit.edu	37	1	145558885	145558885	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148342528	148342528	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151491775	151491775	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADAM15	8751	broad.mit.edu	37	1	155033250	155033250	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
YY1AP1	55249	broad.mit.edu	37	1	155629585	155629585	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
YY1AP1	55249	broad.mit.edu	37	1	155629592	155629592	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM79	84283	broad.mit.edu	37	1	156261349	156261349	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156513806	156513806	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156948001	156948001	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549553	158549553	+	Missense_Mutation	SNP	A	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPOX	5498	broad.mit.edu	37	1	161138959	161138959	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	168014277	168014277	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SCYL3	57147	broad.mit.edu	37	1	169839492	169839492	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf25	81627	broad.mit.edu	37	1	185112497	185112497	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213303065	213303065	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217975148	217975148	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773838	229773838	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773864	229773864	+	Silent	SNP	C	T	T	rs114023508	by1000genomes	TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773886	229773886	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230810788	230810788	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233394101	233394101	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242048726	242048726	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551413	248551413	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28786756	28786756	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZSWIM5	57643	broad.mit.edu	37	1	45553865	45553865	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57233546	57233546	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57233561	57233561	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DIRAS3	9077	broad.mit.edu	37	1	68512369	68512369	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SSX2IP	117178	broad.mit.edu	37	1	85127956	85127956	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92185667	92185667	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19698188	19698188	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43030114	43030114	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C20orf85	128602	broad.mit.edu	37	20	56728657	56728657	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60419818	60419818	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NPBWR2	2832	broad.mit.edu	37	20	62737520	62737520	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31654758	31654758	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DYRK1A	1859	broad.mit.edu	37	21	38862650	38862650	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
XKR3	150165	broad.mit.edu	37	22	17280681	17280681	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42605744	42605744	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44385106	44385106	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102460600	102460600	+	Silent	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109100719	109100719	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NTSR2	23620	broad.mit.edu	37	2	11798719	11798719	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118582552	118582552	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TMEM37	140738	broad.mit.edu	37	2	120194518	120194518	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135883809	135883809	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152349881	152349881	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NOSTRIN	115677	broad.mit.edu	37	2	169717349	169717349	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179440567	179440567	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179481949	179481949	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196636429	196636429	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201437629	201437629	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
INO80D	54891	broad.mit.edu	37	2	206884568	206884568	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	207009718	207009718	+	Missense_Mutation	SNP	A	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21233133	21233133	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DNPEP	23549	broad.mit.edu	37	2	220246839	220246839	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235943740	235943740	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238277324	238277324	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238283544	238283544	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27460592	27460592	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45826690	45826690	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49244635	49244635	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54874297	54874297	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LOXL3	84695	broad.mit.edu	37	2	74779555	74779555	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8931355	8931355	+	Splice_Site	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LMAN2L	81562	broad.mit.edu	37	2	97373526	97373526	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C3orf52	79669	broad.mit.edu	37	3	111821711	111821711	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111996650	111996650	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124746337	124746337	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TPRA1	131601	broad.mit.edu	37	3	127295478	127295478	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CAND2	23066	broad.mit.edu	37	3	12858016	12858016	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134920360	134920360	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PCCB	5096	broad.mit.edu	37	3	136045670	136045670	+	Silent	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CP	1356	broad.mit.edu	37	3	148897410	148897410	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155232664	155232664	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM59	286827	broad.mit.edu	37	3	160156757	160156757	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17349598	17349598	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178952074	178952074	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179399668	179399668	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LRRC15	131578	broad.mit.edu	37	3	194081538	194081538	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PIGZ	80235	broad.mit.edu	37	3	196674789	196674789	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
IQCG	84223	broad.mit.edu	37	3	197616472	197616472	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CCDC12	151903	broad.mit.edu	37	3	46963564	46963564	+	Missense_Mutation	SNP	T	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47142947	47142947	+	Splice_Site	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62261595	62261595	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP4R2	151987	broad.mit.edu	37	3	73114035	73114035	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP4R2	151987	broad.mit.edu	37	3	73114241	73114241	+	Silent	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
WDR1	9948	broad.mit.edu	37	4	10083020	10083020	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MANBA	4126	broad.mit.edu	37	4	103595103	103595103	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109004529	109004529	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NAA15	80155	broad.mit.edu	37	4	140309202	140309202	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CLGN	1047	broad.mit.edu	37	4	141320087	141320087	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SMARCA5	8467	broad.mit.edu	37	4	144469207	144469207	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ARFIP1	27236	broad.mit.edu	37	4	153791962	153791962	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47593107	47593107	+	Silent	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLC10A4	201780	broad.mit.edu	37	4	48487058	48487058	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6087327	6087327	+	Silent	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
GNRHR	2798	broad.mit.edu	37	4	68619664	68619664	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ANKRD56	345079	broad.mit.edu	37	4	77816916	77816916	+	Missense_Mutation	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101834305	101834305	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10391798	10391798	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112770004	112770004	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126734416	126734416	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
FCHSD1	89848	broad.mit.edu	37	5	141025388	141025388	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160758051	160758051	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PDLIM7	9260	broad.mit.edu	37	5	176910713	176910713	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TBC1D9B	23061	broad.mit.edu	37	5	179318451	179318451	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37185055	37185055	+	Missense_Mutation	SNP	T	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PAIP1	10605	broad.mit.edu	37	5	43533846	43533846	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7817056	7817056	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFYVE16	9765	broad.mit.edu	37	5	79732916	79732916	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
NR2F1	7025	broad.mit.edu	37	5	92929285	92929285	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152804307	152804307	+	Silent	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
HIST1H3I	8354	broad.mit.edu	37	6	27839872	27839872	+	Silent	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31617000	31617000	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32017875	32017875	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
PPP2R5D	5528	broad.mit.edu	37	6	42978430	42978430	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43156401	43156401	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7581491	7581491	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75843060	75843060	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RIPPLY2	134701	broad.mit.edu	37	6	84563822	84563822	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
OR2F2	135948	broad.mit.edu	37	7	143633147	143633147	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14733765	14733765	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17378911	17378911	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
GTF2IRD1	9569	broad.mit.edu	37	7	73933938	73933938	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SRCRB4D	136853	broad.mit.edu	37	7	76033741	76033741	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RSBN1L	222194	broad.mit.edu	37	7	77408178	77408178	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ACN9	57001	broad.mit.edu	37	7	96810512	96810512	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
GRHL2	79977	broad.mit.edu	37	8	102649155	102649155	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105459566	105459566	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SOX7	83595	broad.mit.edu	37	8	10584142	10584142	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107763046	107763046	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113348981	113348981	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121530149	121530149	+	Missense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
MTUS1	57509	broad.mit.edu	37	8	17612647	17612647	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35406937	35406937	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
SDCBP	6386	broad.mit.edu	37	8	59494245	59494245	+	Silent	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764240	77764240	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104309797	104309797	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107547853	107547853	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
TRIM32	22954	broad.mit.edu	37	9	119460323	119460323	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
FIBCD1	84929	broad.mit.edu	37	9	133780649	133780649	+	Silent	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14776080	14776080	+	Missense_Mutation	SNP	C	T	T	rs61735747	by1000genomes	TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19082988	19082988	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIF27	55582	broad.mit.edu	37	9	86457231	86457231	+	Missense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109696041	109696041	+	Silent	SNP	C	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110961090	110961090	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
CDR1	1038	broad.mit.edu	37	X	139865962	139865962	+	Silent	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44969327	44969327	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
APEX2	27301	broad.mit.edu	37	X	55033263	55033263	+	Missense_Mutation	SNP	G	A	A			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
FOXR2	139628	broad.mit.edu	37	X	55650500	55650500	+	Missense_Mutation	SNP	G	T	T			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73964271	73964271	+	Missense_Mutation	SNP	G	C	C			TCGA-DK-A1AB-01	TCGA-DK-A1AB-01									Somatic	Phase_I	Capture				Illumina GAIIx
