Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAMTS4	9507	genome.wustl.edu	37	1	161166023	161166023	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NRXN1	9378	genome.wustl.edu	37	2	50464013	50464013	+	Missense_Mutation	SNP	T	T	C			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TBC1D8	11138	genome.wustl.edu	37	2	101656720	101656720	+	Missense_Mutation	SNP	G	G	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEC13	6396	genome.wustl.edu	37	3	10345799	10345799	+	Nonsense_Mutation	SNP	T	T	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEC22C	9117	genome.wustl.edu	37	3	42597440	42597440	+	Missense_Mutation	SNP	G	G	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IGFBP7	3490	genome.wustl.edu	37	4	57898678	57898678	+	Missense_Mutation	SNP	C	C	G			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA1	56147	genome.wustl.edu	37	5	140166256	140166256	+	Silent	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MANEA	79694	genome.wustl.edu	37	6	96034639	96034639	+	Silent	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UTRN	7402	genome.wustl.edu	37	6	144765436	144765436	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IGF2R	3482	genome.wustl.edu	37	6	160479063	160479063	+	Silent	SNP	T	T	C			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLIPR2	152007	genome.wustl.edu	37	9	36162403	36162403	+	Missense_Mutation	SNP	G	G	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COBRA1	25920	genome.wustl.edu	37	9	140166584	140166584	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANKRD16	54522	genome.wustl.edu	37	10	5925985	5925985	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPATS2	65244	genome.wustl.edu	37	12	49916574	49916574	+	Missense_Mutation	SNP	G	G	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AMHR2	269	genome.wustl.edu	37	12	53819661	53819661	+	Silent	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP2B1	490	genome.wustl.edu	37	12	89997491	89997491	+	Missense_Mutation	SNP	G	G	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KDM2B	84678	genome.wustl.edu	37	12	122018804	122018804	+	Missense_Mutation	SNP	G	G	C			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TEP1	7011	genome.wustl.edu	37	14	20846342	20846342	+	Silent	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGEF40	55701	genome.wustl.edu	37	14	21550563	21550563	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZFYVE26	23503	genome.wustl.edu	37	14	68257316	68257316	+	Missense_Mutation	SNP	G	G	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBBP6	5930	genome.wustl.edu	37	16	24574804	24574804	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67645291	67645291	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67645517	67645517	+	Splice_Site	SNP	G	G	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HP	3240	genome.wustl.edu	37	16	72094689	72094689	+	Missense_Mutation	SNP	T	T	C			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C17orf74	201243	genome.wustl.edu	37	17	7329740	7329740	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFTUD2	9343	genome.wustl.edu	37	17	42942389	42942389	+	Silent	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ELAVL3	1995	genome.wustl.edu	37	19	11565676	11565676	+	Missense_Mutation	SNP	C	C	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NLRP2	55655	genome.wustl.edu	37	19	55495069	55495069	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRWD1	54014	genome.wustl.edu	37	21	40571583	40571583	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZC3H7B	23264	genome.wustl.edu	37	22	41735860	41735860	+	Missense_Mutation	SNP	G	G	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100129144	100129144	genome.wustl.edu	37	X	66594014	66594014	+	Silent	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MED12	9968	genome.wustl.edu	37	X	70348505	70348505	+	Missense_Mutation	SNP	C	C	G			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NXF4	55999	genome.wustl.edu	37	X	101822736	101822736	+	RNA	SNP	G	G	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
H2BFWT	158983	genome.wustl.edu	37	X	103267828	103267828	+	Silent	SNP	G	G	A			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEC1	9947	genome.wustl.edu	37	X	140996434	140996434	+	Missense_Mutation	SNP	A	A	G			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDH22	64405	genome.wustl.edu	37	20	44839105	44839105	+	Missense_Mutation	SNP	C	C	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27087921	27087922	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27101478	27101490	+	Frame_Shift_Del	DEL	GCCCTGCTCCCCT	GCCCTGCTCCCCT	-			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	GCCCTGCTCCCCT	GCCCTGCTCCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FRMPD1	22844	genome.wustl.edu	37	9	37746368	37746368	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C14orf102	55051	genome.wustl.edu	37	14	90755423	90755424	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000226942	0	genome.wustl.edu	37	16	84036	84053	+	Splice_Site	DEL	GGGAGCCTGGAAGCACAC	GGGAGCCTGGAAGCACAC	-			TCGA-A5-A0GM-01	TCGA-A5-A0GM-01	GGGAGCCTGGAAGCACAC	GGGAGCCTGGAAGCACAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
