Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARNT	405	genome.wustl.edu	37	1	150814904	150814904	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DDR2	4921	genome.wustl.edu	37	1	162740317	162740317	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PROX1	5629	genome.wustl.edu	37	1	214171027	214171027	+	Silent	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP27C1	339761	genome.wustl.edu	37	2	127957069	127957069	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CPB1	1360	genome.wustl.edu	37	3	148575316	148575316	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178916854	178916854	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FSTL4	23105	genome.wustl.edu	37	5	132535172	132535172	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A052-01	TCGA-AP-A052-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARAP3	64411	genome.wustl.edu	37	5	141041613	141041613	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL14A1	7373	genome.wustl.edu	37	8	121228617	121228617	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NUP214	8021	genome.wustl.edu	37	9	134073775	134073775	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100289666	100289666	genome.wustl.edu	37	11	33097676	33097676	+	RNA	SNP	T	T	G			TCGA-AP-A052-01	TCGA-AP-A052-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MS4A4A	51338	genome.wustl.edu	37	11	60059853	60059853	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A052-01	TCGA-AP-A052-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100128626	100128626	genome.wustl.edu	37	13	64385511	64385511	+	RNA	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SOCS4	122809	genome.wustl.edu	37	14	55511039	55511039	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A052-01	TCGA-AP-A052-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMED8	283578	genome.wustl.edu	37	14	77812811	77812811	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GABRB3	2562	genome.wustl.edu	37	15	26866466	26866466	+	Silent	SNP	C	C	A			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHRM5	1133	genome.wustl.edu	37	15	34355985	34355985	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A052-01	TCGA-AP-A052-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BMF	90427	genome.wustl.edu	37	15	40398215	40398215	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBXL19	54620	genome.wustl.edu	37	16	30958263	30958263	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF267	10308	genome.wustl.edu	37	16	31926099	31926099	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANKRD11	29123	genome.wustl.edu	37	16	89351187	89351187	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR3A2	4995	genome.wustl.edu	37	17	3181503	3181503	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AOC3	8639	genome.wustl.edu	37	17	41003742	41003742	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DCC	1630	genome.wustl.edu	37	18	50683801	50683801	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SALL3	27164	genome.wustl.edu	37	18	76757209	76757209	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF560	147741	genome.wustl.edu	37	19	9578900	9578900	+	Silent	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF135	7694	genome.wustl.edu	37	19	58578553	58578553	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000211459	0	genome.wustl.edu	37	MT	1105	1105	+	RNA	SNP	C	C	T			TCGA-AP-A052-01	TCGA-AP-A052-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198763	0	genome.wustl.edu	37	MT	5048	5048	+	Silent	SNP	T	T	C			TCGA-AP-A052-01	TCGA-AP-A052-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SYAP1	94056	genome.wustl.edu	37	X	16754330	16754330	+	Silent	SNP	T	T	G			TCGA-AP-A052-01	TCGA-AP-A052-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MSN	4478	genome.wustl.edu	37	X	64956747	64956747	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A052-01	TCGA-AP-A052-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACSL4	2182	genome.wustl.edu	37	X	108911504	108911504	+	Splice_Site	SNP	T	T	G			TCGA-AP-A052-01	TCGA-AP-A052-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP24	23358	genome.wustl.edu	37	1	55564204	55564204	+	Missense_Mutation	SNP	T	T	A			TCGA-AP-A052-01	TCGA-AP-A052-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF829	374899	genome.wustl.edu	37	19	37405898	37405929	+	Splice_Site	DEL	ATTCTTTCCTCCTCTTCTGGGTGACACCTGGA	ATTCTTTCCTCCTCTTCTGGGTGACACCTGGA	-			TCGA-AP-A052-01	TCGA-AP-A052-01	ATTCTTTCCTCCTCTTCTGGGTGACACCTGGA	ATTCTTTCCTCCTCTTCTGGGTGACACCTGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
