Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
OR6K3	391114	genome.wustl.edu	37	1	158687254	158687254	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CEP350	9857	genome.wustl.edu	37	1	180013258	180013258	+	Missense_Mutation	SNP	T	T	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTA3	57504	genome.wustl.edu	37	2	42871294	42871294	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
THADA	63892	genome.wustl.edu	37	2	43755084	43755084	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PSD4	23550	genome.wustl.edu	37	2	113956357	113956357	+	Silent	SNP	T	T	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ALS2CR12	130540	genome.wustl.edu	37	2	202195493	202195493	+	Silent	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SP140	11262	genome.wustl.edu	37	2	231176283	231176283	+	Silent	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SYN2	6854	genome.wustl.edu	37	3	12211333	12211333	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ROBO2	6092	genome.wustl.edu	37	3	77657009	77657009	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
XRN1	54464	genome.wustl.edu	37	3	142151540	142151540	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CPN2	1370	genome.wustl.edu	37	3	194062821	194062821	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STIM2	57620	genome.wustl.edu	37	4	27010441	27010441	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MARCH6	10299	genome.wustl.edu	37	5	10391774	10391774	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRIO	7204	genome.wustl.edu	37	5	14498717	14498717	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGA6	56109	genome.wustl.edu	37	5	140753893	140753893	+	Silent	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAT2	2196	genome.wustl.edu	37	5	150925568	150925568	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CFB	629	genome.wustl.edu	37	6	31914812	31914812	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1	5314	genome.wustl.edu	37	6	51799029	51799029	+	Silent	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF292	23036	genome.wustl.edu	37	6	87970705	87970705	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC442249	442249	genome.wustl.edu	37	6	112683508	112683508	+	RNA	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF804B	219578	genome.wustl.edu	37	7	88965248	88965248	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TAS2R39	259285	genome.wustl.edu	37	7	142881421	142881421	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FZD6	8323	genome.wustl.edu	37	8	104312372	104312372	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ADCY8	114	genome.wustl.edu	37	8	132052131	132052131	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RANBP6	26953	genome.wustl.edu	37	9	6012536	6012536	+	Silent	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF37BP	100129482	genome.wustl.edu	37	10	43016016	43016016	+	RNA	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANXA7	310	genome.wustl.edu	37	10	75142995	75142995	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR51M1	390059	genome.wustl.edu	37	11	5411428	5411428	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BEST1	7439	genome.wustl.edu	37	11	61725743	61725743	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TIGD3	220359	genome.wustl.edu	37	11	65124581	65124581	+	Silent	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCYL1	57410	genome.wustl.edu	37	11	65298136	65298136	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRIM49	57093	genome.wustl.edu	37	11	89531407	89531407	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLHDC5	57542	genome.wustl.edu	37	12	27950922	27950922	+	Missense_Mutation	SNP	T	T	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RASSF3	283349	genome.wustl.edu	37	12	65088637	65088637	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RAD9B	144715	genome.wustl.edu	37	12	110956531	110956531	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC63	160762	genome.wustl.edu	37	12	111291332	111291332	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDS5B	23047	genome.wustl.edu	37	13	33344497	33344497	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC7A8	23428	genome.wustl.edu	37	14	23598870	23598870	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EDC4	23644	genome.wustl.edu	37	16	67915236	67915236	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PAFAH1B1	5048	genome.wustl.edu	37	17	2577385	2577385	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF532	55205	genome.wustl.edu	37	18	56585622	56585622	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF321P	399669	genome.wustl.edu	37	19	53432625	53432625	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SYNJ1	8867	genome.wustl.edu	37	21	34037339	34037339	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIWIL3	440822	genome.wustl.edu	37	22	25144907	25144907	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
APEX2	27301	genome.wustl.edu	37	X	55029468	55029468	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MORC4	79710	genome.wustl.edu	37	X	106219826	106219826	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZBTB33	10009	genome.wustl.edu	37	X	119388181	119388181	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TKTL1	8277	genome.wustl.edu	37	X	153557963	153557963	+	Silent	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NRAS	4893	genome.wustl.edu	37	1	115258685	115258685	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ITGA10	8515	genome.wustl.edu	37	1	145538010	145538010	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NID1	4811	genome.wustl.edu	37	1	236201434	236201434	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR2G2	81470	genome.wustl.edu	37	1	247752159	247752159	+	Silent	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCNS3	3790	genome.wustl.edu	37	2	18113232	18113232	+	Silent	SNP	C	C	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCG2	9429	genome.wustl.edu	37	4	89013410	89013410	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIST1H3B	8358	genome.wustl.edu	37	6	26032194	26032194	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDC14C	168448	genome.wustl.edu	37	7	48965198	48965198	+	RNA	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288377	100288377	genome.wustl.edu	37	7	65824304	65824304	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLB	5423	genome.wustl.edu	37	8	42206558	42206558	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1L1	93035	genome.wustl.edu	37	8	110457796	110457796	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC120824	120824	genome.wustl.edu	37	11	48997480	48997480	+	Missense_Mutation	SNP	T	T	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LTBP3	4054	genome.wustl.edu	37	11	65320666	65320666	+	Silent	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANAPC5	51433	genome.wustl.edu	37	12	121747634	121747634	+	Missense_Mutation	SNP	A	A	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP12A	479	genome.wustl.edu	37	13	25262575	25262575	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACTG1	71	genome.wustl.edu	37	17	79479111	79479111	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000246923	0	genome.wustl.edu	37	18	65503495	65503495	+	RNA	SNP	G	G	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RTTN	25914	genome.wustl.edu	37	18	67742586	67742586	+	Splice_Site	SNP	A	A	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF99	7652	genome.wustl.edu	37	19	22942361	22942361	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STS	412	genome.wustl.edu	37	X	7268184	7268184	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCB7	22	genome.wustl.edu	37	X	74282207	74282207	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR112	139378	genome.wustl.edu	37	X	135488086	135488086	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HNRNPU-AS1	284702	genome.wustl.edu	37	1	245005933	245005935	+	RNA	DEL	ATG	ATG	-			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TFAP2B	7021	genome.wustl.edu	37	6	50805765	50805765	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000247508	0	genome.wustl.edu	37	17	58073273	58073273	+	RNA	DEL	C	C	-			TCGA-AP-A0L9-01	TCGA-AP-A0L9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
