Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CSDE1	7812	genome.wustl.edu	37	1	115277115	115277115	+	Missense_Mutation	SNP	A	A	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CADM3	57863	genome.wustl.edu	37	1	159163349	159163349	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CNTN3	5067	genome.wustl.edu	37	3	74474014	74474014	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC41A3	54946	genome.wustl.edu	37	3	125775246	125775246	+	Silent	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP13A4	84239	genome.wustl.edu	37	3	193232504	193232504	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBA6	55236	genome.wustl.edu	37	4	68488926	68488926	+	Missense_Mutation	SNP	A	A	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
METAP1	23173	genome.wustl.edu	37	4	99978957	99978957	+	Missense_Mutation	SNP	A	A	G			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MANBA	4126	genome.wustl.edu	37	4	103556160	103556160	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACSL6	23305	genome.wustl.edu	37	5	131321105	131321105	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA12	56137	genome.wustl.edu	37	5	140256371	140256371	+	Silent	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA13	56136	genome.wustl.edu	37	5	140264051	140264051	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGB4	8641	genome.wustl.edu	37	5	140768186	140768186	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TINAG	27283	genome.wustl.edu	37	6	54173504	54173504	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CALN1	83698	genome.wustl.edu	37	7	71252851	71252851	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SAMD9L	219285	genome.wustl.edu	37	7	92760892	92760892	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM55A	55529	genome.wustl.edu	37	8	92030689	92030689	+	Missense_Mutation	SNP	C	C	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1L1	93035	genome.wustl.edu	37	8	110502266	110502266	+	Silent	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAI1	27019	genome.wustl.edu	37	9	34506738	34506738	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ORM1	5004	genome.wustl.edu	37	9	117085972	117085972	+	Silent	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PSMD5	5711	genome.wustl.edu	37	9	123586870	123586870	+	Missense_Mutation	SNP	A	A	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692929	89692929	+	Missense_Mutation	SNP	A	A	G			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000181950	0	genome.wustl.edu	37	11	55235084	55235084	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC86	79080	genome.wustl.edu	37	11	60610082	60610082	+	Missense_Mutation	SNP	A	A	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAT3	120114	genome.wustl.edu	37	11	92577802	92577802	+	Silent	SNP	T	T	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC643733	643733	genome.wustl.edu	37	11	104778261	104778261	+	RNA	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRK2	120892	genome.wustl.edu	37	12	40692960	40692960	+	Missense_Mutation	SNP	A	A	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPAP3	79657	genome.wustl.edu	37	12	48090102	48090102	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBE3B	89910	genome.wustl.edu	37	12	109924286	109924286	+	Missense_Mutation	SNP	T	T	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DHX37	57647	genome.wustl.edu	37	12	125434540	125434540	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IL25	64806	genome.wustl.edu	37	14	23842520	23842520	+	Missense_Mutation	SNP	G	G	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPATA8	145946	genome.wustl.edu	37	15	97327420	97327420	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM65A	79567	genome.wustl.edu	37	16	67573993	67573993	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67662323	67662323	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC283922	283922	genome.wustl.edu	37	16	74372400	74372400	+	RNA	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HGS	9146	genome.wustl.edu	37	17	79655784	79655784	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C18orf45	85019	genome.wustl.edu	37	18	20964996	20964996	+	Silent	SNP	A	A	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF556	80032	genome.wustl.edu	37	19	2876166	2876166	+	Missense_Mutation	SNP	A	A	G			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC16	94025	genome.wustl.edu	37	19	9048229	9048229	+	Silent	SNP	C	C	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF470	388566	genome.wustl.edu	37	19	57085955	57085955	+	Missense_Mutation	SNP	T	T	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BPIFB4	149954	genome.wustl.edu	37	20	31672739	31672739	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLA1	5422	genome.wustl.edu	37	X	24745999	24745999	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLA1	5422	genome.wustl.edu	37	X	25014019	25014019	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM133A	286499	genome.wustl.edu	37	X	92964855	92964855	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BHLHB9	80823	genome.wustl.edu	37	X	102005024	102005024	+	Silent	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NRK	203447	genome.wustl.edu	37	X	105189996	105189996	+	Missense_Mutation	SNP	C	C	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR101	83550	genome.wustl.edu	37	X	136112567	136112567	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FMR1-AS1	100126270	genome.wustl.edu	37	X	147003593	147003593	+	RNA	SNP	T	T	C			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MECP2	4204	genome.wustl.edu	37	X	153297785	153297785	+	Missense_Mutation	SNP	G	G	A			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NPC1L1	29881	genome.wustl.edu	37	7	44555772	44555772	+	Missense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGAP21	57584	genome.wustl.edu	37	10	24908436	24908436	+	Silent	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89720852	89720852	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ESR1	2099	genome.wustl.edu	37	6	152382133	152382141	+	In_Frame_Del	DEL	GGAAAATGT	GGAAAATGT	-			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	GGAAAATGT	GGAAAATGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100131785	100131785	genome.wustl.edu	37	7	105170513	105170516	+	RNA	DEL	TAAC	TAAC	-			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	TAAC	TAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR5P3	120066	genome.wustl.edu	37	11	7846949	7846949	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000246966	0	genome.wustl.edu	37	12	70861943	70861944	+	RNA	INS	-	-	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP44	84101	genome.wustl.edu	37	12	95911951	95911951	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000229581	0	genome.wustl.edu	37	GL000211.1	156366	156367	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B5-A0K7-01	TCGA-B5-A0K7-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
