Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CLSTN1	22883	genome.wustl.edu	37	1	9794181	9794181	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SIPA1L2	57568	genome.wustl.edu	37	1	232574913	232574913	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR2T35	403244	genome.wustl.edu	37	1	248802147	248802147	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP34	9736	genome.wustl.edu	37	2	61544830	61544830	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IGKV1D-8	28904	genome.wustl.edu	37	2	90260166	90260166	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM168B	130074	genome.wustl.edu	37	2	131812927	131812927	+	Silent	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TTN	7273	genome.wustl.edu	37	2	179599284	179599284	+	Silent	SNP	T	T	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CWC22	57703	genome.wustl.edu	37	2	180810034	180810034	+	Missense_Mutation	SNP	T	T	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC645978	645978	genome.wustl.edu	37	2	207274885	207274885	+	RNA	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCN5A	6331	genome.wustl.edu	37	3	38592796	38592796	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266112	41266112	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CADPS	8618	genome.wustl.edu	37	3	62739267	62739267	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCF3	55324	genome.wustl.edu	37	3	183910956	183910956	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA0922	23240	genome.wustl.edu	37	4	154525163	154525163	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NEK1	4750	genome.wustl.edu	37	4	170327814	170327814	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAH5	1767	genome.wustl.edu	37	5	13692124	13692124	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC402198	402198	genome.wustl.edu	37	5	14960975	14960975	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AGGF1	55109	genome.wustl.edu	37	5	76349792	76349792	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA0319	9856	genome.wustl.edu	37	6	24582513	24582513	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAH8	1769	genome.wustl.edu	37	6	38825468	38825468	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR116	221395	genome.wustl.edu	37	6	46826785	46826785	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTGF	1490	genome.wustl.edu	37	6	132271289	132271289	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIVEP2	3097	genome.wustl.edu	37	6	143090873	143090873	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STX11	8676	genome.wustl.edu	37	6	144508555	144508555	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MLL5	55904	genome.wustl.edu	37	7	104747057	104747057	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBR5	51366	genome.wustl.edu	37	8	103373850	103373850	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RUSC2	9853	genome.wustl.edu	37	9	35559266	35559266	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TLN1	7094	genome.wustl.edu	37	9	35700289	35700289	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ASB6	140459	genome.wustl.edu	37	9	132401494	132401494	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FCN1	2219	genome.wustl.edu	37	9	137801649	137801649	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NEBL	10529	genome.wustl.edu	37	10	21076206	21076206	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SUPV3L1	6832	genome.wustl.edu	37	10	70946299	70946299	+	Silent	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89690805	89690805	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC5B	727897	genome.wustl.edu	37	11	1263750	1263750	+	Silent	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IPO7	10527	genome.wustl.edu	37	11	9457843	9457843	+	Missense_Mutation	SNP	A	A	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AMPD3	272	genome.wustl.edu	37	11	10517180	10517180	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRP4	4038	genome.wustl.edu	37	11	46917500	46917500	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC22A11	55867	genome.wustl.edu	37	11	64335126	64335126	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNHIT2	741	genome.wustl.edu	37	11	64884406	64884406	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD4	1108	genome.wustl.edu	37	12	6700679	6700679	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IFLTD1	160492	genome.wustl.edu	37	12	25702406	25702406	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TROAP	10024	genome.wustl.edu	37	12	49717771	49717771	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPATS2	65244	genome.wustl.edu	37	12	49890718	49890718	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRPF40B	25766	genome.wustl.edu	37	12	50031303	50031303	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PPP1CC	5501	genome.wustl.edu	37	12	111157944	111157944	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PAPLN	89932	genome.wustl.edu	37	14	73731002	73731002	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBLN5	10516	genome.wustl.edu	37	14	92361408	92361408	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HERC2P2	400322	genome.wustl.edu	37	15	23295616	23295616	+	RNA	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000247530	0	genome.wustl.edu	37	15	63880395	63880395	+	RNA	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC36	55282	genome.wustl.edu	37	16	67375966	67375966	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TNK1	8711	genome.wustl.edu	37	17	7290405	7290405	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COASY	80347	genome.wustl.edu	37	17	40716143	40716143	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OTOP3	347741	genome.wustl.edu	37	17	72943293	72943293	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TIMP2	7077	genome.wustl.edu	37	17	76851761	76851761	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDH19	28513	genome.wustl.edu	37	18	64172428	64172428	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SOCS6	9306	genome.wustl.edu	37	18	67993400	67993400	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CD209	30835	genome.wustl.edu	37	19	7810689	7810689	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ILVBL	10994	genome.wustl.edu	37	19	15234361	15234361	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZSWIM3	140831	genome.wustl.edu	37	20	44506762	44506762	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RASD2	23551	genome.wustl.edu	37	22	35943099	35943099	+	Silent	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198804	0	genome.wustl.edu	37	MT	7078	7078	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZFX	7543	genome.wustl.edu	37	X	24197520	24197520	+	Missense_Mutation	SNP	T	T	G			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFNB1	1947	genome.wustl.edu	37	X	68060232	68060232	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC389873	389873	genome.wustl.edu	37	X	72989945	72989945	+	RNA	SNP	T	T	C			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NKAP	79576	genome.wustl.edu	37	X	119059334	119059334	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MIR505	574508	genome.wustl.edu	37	X	139006384	139006384	+	RNA	SNP	G	G	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FLNA	2316	genome.wustl.edu	37	X	153596052	153596052	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRCC3	79184	genome.wustl.edu	37	X	154317627	154317627	+	Splice_Site	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR4F21	441308	genome.wustl.edu	37	8	116746	116746	+	Silent	SNP	G	G	T			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCRIB	23513	genome.wustl.edu	37	8	144895096	144895096	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EXOC3L1	283849	genome.wustl.edu	37	16	67221448	67221448	+	Silent	SNP	G	G	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ESPNP	284729	genome.wustl.edu	37	1	17034456	17034463	+	RNA	DEL	GCGCGCGT	GCGCGCGT	-			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	GCGCGCGT	GCGCGCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIST2H2AB	317772	genome.wustl.edu	37	1	149859103	149859104	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NDUFA5	4698	genome.wustl.edu	37	7	123197005	123197006	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BG-A0MI-01	TCGA-BG-A0MI-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
