Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
BLZF1	8548	genome.wustl.edu	37	1	169345878	169345878	+	Silent	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NID1	4811	genome.wustl.edu	37	1	236201448	236201448	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NCKAP5	344148	genome.wustl.edu	37	2	133541217	133541217	+	Missense_Mutation	SNP	G	G	C			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF654	55279	genome.wustl.edu	37	3	88189043	88189043	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYL5	4636	genome.wustl.edu	37	4	674922	674922	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPHA5	2044	genome.wustl.edu	37	4	66201833	66201833	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LPCAT1	79888	genome.wustl.edu	37	5	1494912	1494912	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TTC37	9652	genome.wustl.edu	37	5	94805538	94805538	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA12	56137	genome.wustl.edu	37	5	140255345	140255345	+	Silent	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBM27	54439	genome.wustl.edu	37	5	145643143	145643143	+	Missense_Mutation	SNP	T	T	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPRIN1	114787	genome.wustl.edu	37	5	176026254	176026254	+	Missense_Mutation	SNP	A	A	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1	5314	genome.wustl.edu	37	6	51618014	51618014	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MMS22L	253714	genome.wustl.edu	37	6	97634457	97634457	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EIF3B	8662	genome.wustl.edu	37	7	2412383	2412383	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANKIB1	54467	genome.wustl.edu	37	7	91972444	91972444	+	Silent	SNP	C	C	G			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DLC1	10395	genome.wustl.edu	37	8	13357421	13357421	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PXDNL	137902	genome.wustl.edu	37	8	52320933	52320933	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RP1	6101	genome.wustl.edu	37	8	55534730	55534730	+	Silent	SNP	A	A	G			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD7	55636	genome.wustl.edu	37	8	61741241	61741241	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NAMPTL	646309	genome.wustl.edu	37	10	36812822	36812822	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000250793	0	genome.wustl.edu	37	10	87406912	87406912	+	RNA	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WAPAL	23063	genome.wustl.edu	37	10	88277363	88277363	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDHX	8050	genome.wustl.edu	37	11	34938234	34938234	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTNR1B	4544	genome.wustl.edu	37	11	92715124	92715124	+	Silent	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C11orf34	349633	genome.wustl.edu	37	11	112126170	112126170	+	Silent	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR133	283383	genome.wustl.edu	37	12	131466545	131466545	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDH9	5101	genome.wustl.edu	37	13	67802442	67802442	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TBC1D4	9882	genome.wustl.edu	37	13	75869002	75869002	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WARS	7453	genome.wustl.edu	37	14	100803413	100803413	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC440233	440233	genome.wustl.edu	37	15	23410710	23410710	+	RNA	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ALDH1A3	220	genome.wustl.edu	37	15	101440918	101440918	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCC6	368	genome.wustl.edu	37	16	16315528	16315528	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BCAR1	9564	genome.wustl.edu	37	16	75298392	75298392	+	Missense_Mutation	SNP	C	C	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC37BP1	147172	genome.wustl.edu	37	17	28964369	28964369	+	RNA	SNP	T	T	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MPP2	4355	genome.wustl.edu	37	17	41959878	41959878	+	Missense_Mutation	SNP	C	C	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIF18B	146909	genome.wustl.edu	37	17	43003803	43003803	+	Splice_Site	SNP	C	C	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCPEP1	59342	genome.wustl.edu	37	17	55079509	55079509	+	Silent	SNP	T	T	C			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CLEC4M	10332	genome.wustl.edu	37	19	7831669	7831669	+	Silent	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC4B	94030	genome.wustl.edu	37	19	51021739	51021739	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TNNT1	7138	genome.wustl.edu	37	19	55649383	55649383	+	Missense_Mutation	SNP	C	C	G			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACSS1	84532	genome.wustl.edu	37	20	24988467	24988467	+	Silent	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDH4	1002	genome.wustl.edu	37	20	60318708	60318708	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BCR	613	genome.wustl.edu	37	22	23656202	23656202	+	Silent	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLXNB2	23654	genome.wustl.edu	37	22	50721777	50721777	+	Missense_Mutation	SNP	A	A	C			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000211459	0	genome.wustl.edu	37	MT	901	901	+	RNA	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198763	0	genome.wustl.edu	37	MT	5119	5119	+	Missense_Mutation	SNP	T	T	C			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TAB3	257397	genome.wustl.edu	37	X	30873213	30873213	+	Missense_Mutation	SNP	T	T	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMC1A	8243	genome.wustl.edu	37	X	53449449	53449449	+	Missense_Mutation	SNP	T	T	C			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288033	100288033	genome.wustl.edu	37	X	70887736	70887736	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM133A	286499	genome.wustl.edu	37	X	92964827	92964827	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ALG13	79868	genome.wustl.edu	37	X	110980098	110980098	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AVPR2	554	genome.wustl.edu	37	X	153171162	153171162	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCARNA22	677770	genome.wustl.edu	37	4	1976379	1976379	+	RNA	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AGAP6	414189	genome.wustl.edu	37	10	51769799	51769799	+	Silent	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C10orf92	54777	genome.wustl.edu	37	10	134621939	134621939	+	Silent	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RIN3	79890	genome.wustl.edu	37	14	93118516	93118516	+	Silent	SNP	G	G	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DDX24	57062	genome.wustl.edu	37	14	94526801	94526801	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NYX	60506	genome.wustl.edu	37	X	41333519	41333519	+	Silent	SNP	C	C	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NBEAL2	23218	genome.wustl.edu	37	3	47040005	47040007	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA1217	56243	genome.wustl.edu	37	10	24669809	24669810	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89711925	89711926	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGAP35	2909	genome.wustl.edu	37	19	47423264	47423264	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP26	83844	genome.wustl.edu	37	X	132161204	132161205	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BS-A0WQ-01	TCGA-BS-A0WQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
