Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27106861	27106861	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GALNT5	11227	genome.wustl.edu	37	2	158157422	158157422	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C3orf20	84077	genome.wustl.edu	37	3	14768528	14768528	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MCF2L2	23101	genome.wustl.edu	37	3	183041107	183041107	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC34A2	10568	genome.wustl.edu	37	4	25678015	25678015	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NIPBL	25836	genome.wustl.edu	37	5	37022190	37022190	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGA3	56112	genome.wustl.edu	37	5	140723784	140723784	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C6orf201	404220	genome.wustl.edu	37	6	4087904	4087904	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCLO	27445	genome.wustl.edu	37	7	82585187	82585187	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1L1	93035	genome.wustl.edu	37	8	110461608	110461608	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KDM4C	23081	genome.wustl.edu	37	9	7128116	7128116	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GNE	10020	genome.wustl.edu	37	9	36222849	36222849	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OLFML2A	169611	genome.wustl.edu	37	9	127572207	127572207	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89720857	89720857	+	Nonsense_Mutation	SNP	C	C	G			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCND1	595	genome.wustl.edu	37	11	69466021	69466021	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZBTB16	7704	genome.wustl.edu	37	11	114121229	114121229	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANO2	57101	genome.wustl.edu	37	12	5853322	5853322	+	Splice_Site	SNP	C	C	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRT85	3891	genome.wustl.edu	37	12	52757081	52757081	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FLT1	2321	genome.wustl.edu	37	13	29008333	29008333	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GDE1	51573	genome.wustl.edu	37	16	19514911	19514911	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3R5	23533	genome.wustl.edu	37	17	8784028	8784028	+	Silent	SNP	C	C	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRT23	25984	genome.wustl.edu	37	17	39079247	39079247	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRT17	3872	genome.wustl.edu	37	17	39777998	39777998	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLC3	147700	genome.wustl.edu	37	19	45853784	45853784	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PPP5C	5536	genome.wustl.edu	37	19	46850394	46850394	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NLRP5	126206	genome.wustl.edu	37	19	56538394	56538394	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CSRP2BP	57325	genome.wustl.edu	37	20	18125926	18125926	+	Silent	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRTAP19-8	728299	genome.wustl.edu	37	21	32410597	32410597	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SIK1	150094	genome.wustl.edu	37	21	44836669	44836669	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMTN	6525	genome.wustl.edu	37	22	31494660	31494660	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USH2A	7399	genome.wustl.edu	37	1	215848552	215848552	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGAP31	57514	genome.wustl.edu	37	3	119120905	119120905	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF879	345462	genome.wustl.edu	37	5	178459851	178459851	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288822	100288822	genome.wustl.edu	37	17	4693384	4693384	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR179	440435	genome.wustl.edu	37	17	36485646	36485646	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AP1G2	8906	genome.wustl.edu	37	14	24035308	24035311	+	Frame_Shift_Del	DEL	GGGA	GGGA	-			TCGA-D1-A0ZU-01	TCGA-D1-A0ZU-01	GGGA	GGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
