Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
MEGF6	1953	genome.wustl.edu	37	1	3440718	3440718	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
VPS13D	55187	genome.wustl.edu	37	1	12401897	12401897	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACP6	51205	genome.wustl.edu	37	1	147120131	147120131	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZC3H11A	9877	genome.wustl.edu	37	1	203816652	203816652	+	Silent	SNP	T	T	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPRS	2058	genome.wustl.edu	37	1	220178605	220178605	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYCN	4613	genome.wustl.edu	37	2	16082317	16082317	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLEKHB2	55041	genome.wustl.edu	37	2	132110679	132110679	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCN2A	6326	genome.wustl.edu	37	2	166166869	166166869	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FASTKD1	79675	genome.wustl.edu	37	2	170416980	170416980	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BOLL	66037	genome.wustl.edu	37	2	198607850	198607850	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIF1A	547	genome.wustl.edu	37	2	241712573	241712573	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARL8B	55207	genome.wustl.edu	37	3	5164271	5164271	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WDR49	151790	genome.wustl.edu	37	3	167240187	167240187	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCTD8	386617	genome.wustl.edu	37	4	44449696	44449696	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GSTCD	79807	genome.wustl.edu	37	4	106763287	106763287	+	Silent	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAH5	1767	genome.wustl.edu	37	5	13786343	13786343	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SKP2	6502	genome.wustl.edu	37	5	36171752	36171752	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A15W-01	TCGA-D1-A15W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA11	56138	genome.wustl.edu	37	5	140250334	140250334	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDH1	5097	genome.wustl.edu	37	5	141243705	141243705	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFCAB9	285588	genome.wustl.edu	37	5	171630289	171630289	+	Silent	SNP	A	A	G			TCGA-D1-A15W-01	TCGA-D1-A15W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC17A3	10786	genome.wustl.edu	37	6	25868565	25868565	+	Silent	SNP	T	T	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL19A1	1310	genome.wustl.edu	37	6	70875842	70875842	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CGA	1081	genome.wustl.edu	37	6	87795511	87795511	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SAMD3	154075	genome.wustl.edu	37	6	130466485	130466485	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EGFR	1956	genome.wustl.edu	37	7	55266458	55266458	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RUNDC3B	154661	genome.wustl.edu	37	7	87445521	87445521	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SNTG1	54212	genome.wustl.edu	37	8	51362240	51362240	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RIMS2	9699	genome.wustl.edu	37	8	105261015	105261015	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CSMD3	114788	genome.wustl.edu	37	8	113694830	113694830	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMC5	23137	genome.wustl.edu	37	9	72929751	72929751	+	Nonsense_Mutation	SNP	A	A	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TBC1D2	55357	genome.wustl.edu	37	9	100983173	100983173	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEC16A	9919	genome.wustl.edu	37	9	139357961	139357961	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89685305	89685305	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTBP2	1488	genome.wustl.edu	37	10	126715846	126715846	+	Silent	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR5P3	120066	genome.wustl.edu	37	11	7847289	7847289	+	Silent	SNP	G	G	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DPP3	10072	genome.wustl.edu	37	11	66249729	66249729	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRDM10	56980	genome.wustl.edu	37	11	129772222	129772222	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AGAP2	116986	genome.wustl.edu	37	12	58129157	58129157	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STAB2	55576	genome.wustl.edu	37	12	104015859	104015859	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLR3B	55703	genome.wustl.edu	37	12	106890645	106890645	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LPAR6	10161	genome.wustl.edu	37	13	48986290	48986290	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NRXN3	9369	genome.wustl.edu	37	14	79933651	79933651	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCNK10	54207	genome.wustl.edu	37	14	88654430	88654430	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRF1	2972	genome.wustl.edu	37	14	105684104	105684104	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SRRM2	23524	genome.wustl.edu	37	16	2818850	2818850	+	Silent	SNP	T	T	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCC6	368	genome.wustl.edu	37	16	16257016	16257016	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRPF8	10594	genome.wustl.edu	37	17	1561557	1561557	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SDK2	54549	genome.wustl.edu	37	17	71443828	71443828	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC30	339291	genome.wustl.edu	37	18	7231739	7231739	+	Silent	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TYK2	7297	genome.wustl.edu	37	19	10464803	10464803	+	Silent	SNP	G	G	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HNRNPL	3191	genome.wustl.edu	37	19	39338057	39338057	+	Silent	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CEP250	11190	genome.wustl.edu	37	20	34067178	34067178	+	Silent	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC17A9	63910	genome.wustl.edu	37	20	61594022	61594022	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ADAMTS5	11096	genome.wustl.edu	37	21	28327086	28327086	+	Silent	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCAF4	57466	genome.wustl.edu	37	21	33044421	33044421	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A15W-01	TCGA-D1-A15W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZMYM3	9203	genome.wustl.edu	37	X	70468156	70468156	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBMXL3	139804	genome.wustl.edu	37	X	114425588	114425588	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEC1	9947	genome.wustl.edu	37	X	140993431	140993431	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEA3	4102	genome.wustl.edu	37	X	151935794	151935794	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NPHP4	261734	genome.wustl.edu	37	1	5987831	5987831	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ERCC3	2071	genome.wustl.edu	37	2	128051272	128051272	+	Silent	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC440917	440917	genome.wustl.edu	37	2	139045795	139045795	+	RNA	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FGD5	152273	genome.wustl.edu	37	3	14861538	14861538	+	Silent	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ODZ3	55714	genome.wustl.edu	37	4	183245285	183245285	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1	5314	genome.wustl.edu	37	6	51900484	51900484	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOD1	10392	genome.wustl.edu	37	7	30475652	30475652	+	Silent	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM90A24P	441332	genome.wustl.edu	37	8	7878205	7878205	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RARG	5916	genome.wustl.edu	37	12	53609209	53609209	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KBTBD6	89890	genome.wustl.edu	37	13	41706635	41706635	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD8	57680	genome.wustl.edu	37	14	21860732	21860732	+	Silent	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBL2	5934	genome.wustl.edu	37	16	53524069	53524069	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000225677	0	genome.wustl.edu	37	22	50655925	50655925	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A15W-01	TCGA-D1-A15W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A15W-01	TCGA-D1-A15W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27106407	27106409	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-D1-A15W-01	TCGA-D1-A15W-01	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000213539	0	genome.wustl.edu	37	9	112295225	112295238	+	Splice_Site	DEL	TTTTTTTTTTTTTT	TTTTTTTTTTTTTT	-			TCGA-D1-A15W-01	TCGA-D1-A15W-01	TTTTTTTTTTTTTT	TTTTTTTTTTTTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
