Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
MIR551A	693135	genome.wustl.edu	37	1	3477293	3477293	+	RNA	SNP	G	G	T			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27106539	27106539	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CSMD2	114784	genome.wustl.edu	37	1	34068027	34068027	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FMN2	56776	genome.wustl.edu	37	1	240255851	240255851	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIF26B	55083	genome.wustl.edu	37	1	245847663	245847663	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYT1L	23040	genome.wustl.edu	37	2	1893073	1893073	+	Silent	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WDR35	57539	genome.wustl.edu	37	2	20133210	20133210	+	Silent	SNP	T	T	C			TCGA-D1-A162-01	TCGA-D1-A162-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DYNC1LI1	51143	genome.wustl.edu	37	3	32612204	32612204	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACAA1	30	genome.wustl.edu	37	3	38164608	38164608	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A162-01	TCGA-D1-A162-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF620	253639	genome.wustl.edu	37	3	40558414	40558414	+	RNA	SNP	T	T	A			TCGA-D1-A162-01	TCGA-D1-A162-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A162-01	TCGA-D1-A162-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYL5	4636	genome.wustl.edu	37	4	672487	672487	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WHSC1	7468	genome.wustl.edu	37	4	1962801	1962801	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EGFLAM	133584	genome.wustl.edu	37	5	38451553	38451553	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HOMER1	9456	genome.wustl.edu	37	5	78746866	78746866	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBXL21	26223	genome.wustl.edu	37	5	135272393	135272393	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA12	56137	genome.wustl.edu	37	5	140257090	140257090	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGB3	56102	genome.wustl.edu	37	5	140751490	140751490	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDE6A	5145	genome.wustl.edu	37	5	149263074	149263074	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TIGD6	81789	genome.wustl.edu	37	5	149375901	149375901	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A162-01	TCGA-D1-A162-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MACC1	346389	genome.wustl.edu	37	7	20198167	20198167	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A162-01	TCGA-D1-A162-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GCC1	79571	genome.wustl.edu	37	7	127225077	127225077	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZMAT4	79698	genome.wustl.edu	37	8	40532404	40532404	+	Silent	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STAU2	27067	genome.wustl.edu	37	8	74464468	74464468	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TJP2	9414	genome.wustl.edu	37	9	71833175	71833175	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A162-01	TCGA-D1-A162-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM75D1	389763	genome.wustl.edu	37	9	84608523	84608523	+	Silent	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C10orf122	387718	genome.wustl.edu	37	10	127344606	127344606	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SYT12	91683	genome.wustl.edu	37	11	66802280	66802280	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AICDA	57379	genome.wustl.edu	37	12	8757845	8757845	+	Silent	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRPH	5630	genome.wustl.edu	37	12	49692084	49692084	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C12orf44	60673	genome.wustl.edu	37	12	52467514	52467514	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CALCOCO1	57658	genome.wustl.edu	37	12	54118531	54118531	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RASAL1	8437	genome.wustl.edu	37	12	113541850	113541850	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PSMC6	5706	genome.wustl.edu	37	14	53194327	53194327	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYO5A	4644	genome.wustl.edu	37	15	52708473	52708473	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TXNDC11	51061	genome.wustl.edu	37	16	11815515	11815515	+	Silent	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC7A5	8140	genome.wustl.edu	37	16	87873310	87873310	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RABEP1	9135	genome.wustl.edu	37	17	5238558	5238558	+	Silent	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGEF15	22899	genome.wustl.edu	37	17	8218510	8218510	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000236220	0	genome.wustl.edu	37	17	18610140	18610140	+	Silent	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ITGA2B	3674	genome.wustl.edu	37	17	42460910	42460910	+	Silent	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FASN	2194	genome.wustl.edu	37	17	80046434	80046434	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RAB40B	10966	genome.wustl.edu	37	17	80616525	80616525	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A162-01	TCGA-D1-A162-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C18orf8	29919	genome.wustl.edu	37	18	21109615	21109615	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A162-01	TCGA-D1-A162-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGEF18	23370	genome.wustl.edu	37	19	7527145	7527145	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF571	51276	genome.wustl.edu	37	19	38056194	38056194	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP2B6	1555	genome.wustl.edu	37	19	41510285	41510285	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC4B	94030	genome.wustl.edu	37	19	51022489	51022489	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC12A5	57468	genome.wustl.edu	37	20	44669091	44669091	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C21orf81	391267	genome.wustl.edu	37	21	15352158	15352158	+	RNA	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MT-CYB	0	genome.wustl.edu	37	MT	15042	15042	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MXRA5	25878	genome.wustl.edu	37	X	3229355	3229355	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHKA1	5255	genome.wustl.edu	37	X	71843028	71843028	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GON4L	54856	genome.wustl.edu	37	1	155792091	155792091	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENPP1	5167	genome.wustl.edu	37	6	132182743	132182743	+	Silent	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR4K2	390431	genome.wustl.edu	37	14	20344585	20344585	+	Silent	SNP	T	T	C			TCGA-D1-A162-01	TCGA-D1-A162-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000186831	0	genome.wustl.edu	37	17	18333126	18333126	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF71	58491	genome.wustl.edu	37	19	57133055	57133055	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D1-A162-01	TCGA-D1-A162-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
A1BG	1	genome.wustl.edu	37	19	58861760	58861760	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A162-01	TCGA-D1-A162-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89720812	89720812	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D1-A162-01	TCGA-D1-A162-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MLL2	8085	genome.wustl.edu	37	12	49420480	49420481	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D1-A162-01	TCGA-D1-A162-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SAMD15	161394	genome.wustl.edu	37	14	77857454	77857454	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D1-A162-01	TCGA-D1-A162-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
