Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CAMTA1	23261	genome.wustl.edu	37	1	7797001	7797001	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZBTB8OS	339487	genome.wustl.edu	37	1	33116096	33116096	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CRELD1	78987	genome.wustl.edu	37	3	9979713	9979713	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HRH1	3269	genome.wustl.edu	37	3	11301159	11301159	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BBX	56987	genome.wustl.edu	37	3	107491583	107491583	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C3orf79	152118	genome.wustl.edu	37	3	153203872	153203872	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CRMP1	1400	genome.wustl.edu	37	4	5838609	5838609	+	Silent	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PARM1	25849	genome.wustl.edu	37	4	75938015	75938015	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBM46	166863	genome.wustl.edu	37	4	155719156	155719156	+	Silent	SNP	A	A	G			TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PJA2	9867	genome.wustl.edu	37	5	108673058	108673058	+	Splice_Site	SNP	C	C	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ODZ2	57451	genome.wustl.edu	37	5	167420045	167420045	+	Silent	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EYS	346007	genome.wustl.edu	37	6	65612114	65612114	+	Splice_Site	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARG1	383	genome.wustl.edu	37	6	131902519	131902519	+	Splice_Site	SNP	G	G	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLI3	2737	genome.wustl.edu	37	7	42004888	42004888	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCB4	5244	genome.wustl.edu	37	7	87031487	87031487	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPAM1	6677	genome.wustl.edu	37	7	123599919	123599919	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ODF1	4956	genome.wustl.edu	37	8	103564137	103564137	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LINGO2	158038	genome.wustl.edu	37	9	27948937	27948937	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LCN12	286256	genome.wustl.edu	37	9	139848222	139848222	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FERMT3	83706	genome.wustl.edu	37	11	63987111	63987111	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MMP12	4321	genome.wustl.edu	37	11	102738790	102738790	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRMT8	56341	genome.wustl.edu	37	12	3701431	3701431	+	Silent	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AGAP2	116986	genome.wustl.edu	37	12	58121236	58121236	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM123A	219287	genome.wustl.edu	37	13	25744273	25744273	+	Silent	SNP	C	C	G			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC643677	643677	genome.wustl.edu	37	13	103386645	103386645	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAPK1IP1L	93487	genome.wustl.edu	37	14	55529546	55529546	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STARD9	57519	genome.wustl.edu	37	15	42978613	42978613	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMC5	79838	genome.wustl.edu	37	16	19498557	19498557	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPGRIP1L	23322	genome.wustl.edu	37	16	53706901	53706901	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SNTB2	6645	genome.wustl.edu	37	16	69333597	69333597	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBXO39	162517	genome.wustl.edu	37	17	6683277	6683277	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
JMJD6	23210	genome.wustl.edu	37	17	74720071	74720071	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LAMA3	3909	genome.wustl.edu	37	18	21534477	21534477	+	Silent	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ELAVL1	1994	genome.wustl.edu	37	19	8032470	8032470	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP4F22	126410	genome.wustl.edu	37	19	15636269	15636269	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF280B	140883	genome.wustl.edu	37	22	22842630	22842630	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DMD	1756	genome.wustl.edu	37	X	31792189	31792189	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HUWE1	10075	genome.wustl.edu	37	X	53574861	53574861	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288033	100288033	genome.wustl.edu	37	X	70887854	70887854	+	Silent	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEE1	57692	genome.wustl.edu	37	X	75648566	75648566	+	Silent	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FMR1	2332	genome.wustl.edu	37	X	147018097	147018097	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR50	9248	genome.wustl.edu	37	X	150349035	150349035	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EML3	256364	genome.wustl.edu	37	11	62378369	62378369	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MRE11A	4361	genome.wustl.edu	37	11	94203801	94203801	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CADM1	23705	genome.wustl.edu	37	11	115047265	115047265	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
APP	351	genome.wustl.edu	37	21	27372430	27372430	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27056302	27056302	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL6A3	1293	genome.wustl.edu	37	2	238244937	238244937	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89725047	89725047	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
