Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARID1A	8289	genome.wustl.edu	37	1	27106528	27106528	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GABPB2	126626	genome.wustl.edu	37	1	151065781	151065781	+	Silent	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ALK	238	genome.wustl.edu	37	2	29551215	29551215	+	Splice_Site	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCN3A	6328	genome.wustl.edu	37	2	166032822	166032822	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF662	389114	genome.wustl.edu	37	3	42949567	42949567	+	Silent	SNP	C	C	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ALS2CL	259173	genome.wustl.edu	37	3	46716140	46716140	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DZIP3	9666	genome.wustl.edu	37	3	108363341	108363341	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGAP31	57514	genome.wustl.edu	37	3	119109678	119109678	+	Silent	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR125	166647	genome.wustl.edu	37	4	22390100	22390100	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHOX2B	8929	genome.wustl.edu	37	4	41749672	41749672	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA13	56136	genome.wustl.edu	37	5	140263407	140263407	+	Silent	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGA12	26025	genome.wustl.edu	37	5	140810601	140810601	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ME1	4199	genome.wustl.edu	37	6	84117512	84117512	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRGV4	6977	genome.wustl.edu	37	7	38393444	38393444	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL1A2	1278	genome.wustl.edu	37	7	94057153	94057153	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BNC2	54796	genome.wustl.edu	37	9	16552542	16552542	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA1045	23349	genome.wustl.edu	37	9	34971612	34971612	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL5A1	1289	genome.wustl.edu	37	9	137622191	137622191	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCA2	20	genome.wustl.edu	37	9	139911530	139911530	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AMBRA1	55626	genome.wustl.edu	37	11	46569818	46569818	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBASH3B	84959	genome.wustl.edu	37	11	122667694	122667694	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CD69	969	genome.wustl.edu	37	12	9907656	9907656	+	Splice_Site	SNP	A	A	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LMBR1L	55716	genome.wustl.edu	37	12	49504337	49504337	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYO16	23026	genome.wustl.edu	37	13	109475617	109475617	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDC16	8881	genome.wustl.edu	37	13	115022695	115022695	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR4K1	79544	genome.wustl.edu	37	14	20404558	20404558	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PNN	5411	genome.wustl.edu	37	14	39650458	39650458	+	Silent	SNP	A	A	G			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATXN3	4287	genome.wustl.edu	37	14	92563028	92563028	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CREBBP	1387	genome.wustl.edu	37	16	3788643	3788643	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
APOBR	55911	genome.wustl.edu	37	16	28508943	28508943	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAH9	1770	genome.wustl.edu	37	17	11726208	11726208	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MED24	9862	genome.wustl.edu	37	17	38184164	38184164	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBM39	9584	genome.wustl.edu	37	20	34302145	34302145	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PATZ1	23598	genome.wustl.edu	37	22	31741398	31741398	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16D-01	TCGA-D1-A16D-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCND1	3750	genome.wustl.edu	37	X	48826421	48826421	+	Silent	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPKOW	27238	genome.wustl.edu	37	X	48976074	48976074	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HUWE1	10075	genome.wustl.edu	37	X	53620424	53620424	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CRIPAK	285464	genome.wustl.edu	37	4	1388349	1388349	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CNTNAP3	79937	genome.wustl.edu	37	9	39103796	39103796	+	Silent	SNP	G	G	A			TCGA-D1-A16D-01	TCGA-D1-A16D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MIR514-3	574518	genome.wustl.edu	37	X	146363503	146363503	+	RNA	SNP	A	A	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16D-01	TCGA-D1-A16D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
