Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARID1A	8289	genome.wustl.edu	37	1	27099947	27099947	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TESK2	10420	genome.wustl.edu	37	1	45810620	45810620	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CR2	1380	genome.wustl.edu	37	1	207651364	207651364	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RCOR3	55758	genome.wustl.edu	37	1	211486784	211486784	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SIPA1L2	57568	genome.wustl.edu	37	1	232601076	232601076	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRKCE	5581	genome.wustl.edu	37	2	46234657	46234657	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LMAN2L	81562	genome.wustl.edu	37	2	97377602	97377602	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MBD5	55777	genome.wustl.edu	37	2	149226743	149226743	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NFE2L2	4780	genome.wustl.edu	37	2	178098918	178098918	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CASR	846	genome.wustl.edu	37	3	121980530	121980530	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCKAR	886	genome.wustl.edu	37	4	26483547	26483547	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WDFY3	23001	genome.wustl.edu	37	4	85658480	85658480	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC441046	441046	genome.wustl.edu	37	4	144481243	144481243	+	RNA	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FREM3	166752	genome.wustl.edu	37	4	144620080	144620080	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RFESD	317671	genome.wustl.edu	37	5	94989941	94989941	+	Splice_Site	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PSD2	84249	genome.wustl.edu	37	5	139201585	139201585	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SOX30	11063	genome.wustl.edu	37	5	157078220	157078220	+	Silent	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UNC5A	90249	genome.wustl.edu	37	5	176305474	176305474	+	Splice_Site	SNP	A	A	G			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ELOVL2	54898	genome.wustl.edu	37	6	10990626	10990626	+	Silent	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GRM4	2914	genome.wustl.edu	37	6	34004089	34004089	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INTS1	26173	genome.wustl.edu	37	7	1520024	1520024	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRAT1	221927	genome.wustl.edu	37	7	2584590	2584590	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEMA3C	10512	genome.wustl.edu	37	7	80427428	80427428	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TAF6	6878	genome.wustl.edu	37	7	99709599	99709599	+	Silent	SNP	C	C	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGEF10	9639	genome.wustl.edu	37	8	1877480	1877480	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP6V1H	51606	genome.wustl.edu	37	8	54708309	54708309	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HNF4G	3174	genome.wustl.edu	37	8	76471108	76471108	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ESRP1	54845	genome.wustl.edu	37	8	95676982	95676982	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHF2	5253	genome.wustl.edu	37	9	96428110	96428110	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692883	89692883	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IGF2	3481	genome.wustl.edu	37	11	2161482	2161482	+	Silent	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ST5	6764	genome.wustl.edu	37	11	8734139	8734139	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTH	5741	genome.wustl.edu	37	11	13514070	13514070	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD4	1108	genome.wustl.edu	37	12	6691814	6691814	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PZP	5858	genome.wustl.edu	37	12	9345291	9345291	+	Silent	SNP	T	T	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PPFIA2	8499	genome.wustl.edu	37	12	81719572	81719572	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLR3B	55703	genome.wustl.edu	37	12	106848415	106848415	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBM26	64062	genome.wustl.edu	37	13	79911350	79911350	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZFYVE1	53349	genome.wustl.edu	37	14	73441497	73441497	+	Silent	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C14orf49	161176	genome.wustl.edu	37	14	95916409	95916409	+	Silent	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RTL1	388015	genome.wustl.edu	37	14	101349698	101349698	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288273	100288273	genome.wustl.edu	37	14	106320630	106320630	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100289059	100289059	genome.wustl.edu	37	15	25414719	25414719	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIAS1	8554	genome.wustl.edu	37	15	68378839	68378839	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPSB3	90864	genome.wustl.edu	37	16	1828578	1828578	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SRRM2	23524	genome.wustl.edu	37	16	2808540	2808540	+	Silent	SNP	T	T	C			TCGA-D1-A16E-01	TCGA-D1-A16E-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDILT	204474	genome.wustl.edu	37	16	20396149	20396149	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IRX6	79190	genome.wustl.edu	37	16	55363171	55363171	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MBTPS1	8720	genome.wustl.edu	37	16	84100137	84100137	+	Silent	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WSCD1	23302	genome.wustl.edu	37	17	6023780	6023780	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MPRIP	23164	genome.wustl.edu	37	17	17053495	17053495	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MPP2	4355	genome.wustl.edu	37	17	41958179	41958179	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AFMID	125061	genome.wustl.edu	37	17	76201691	76201691	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOL4	8715	genome.wustl.edu	37	18	31432971	31432971	+	Silent	SNP	T	T	C			TCGA-D1-A16E-01	TCGA-D1-A16E-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP2A13	1553	genome.wustl.edu	37	19	41599635	41599635	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FOXA3	3171	genome.wustl.edu	37	19	46376055	46376055	+	Silent	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM143	55260	genome.wustl.edu	37	19	48846684	48846684	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTSZ	1522	genome.wustl.edu	37	20	57581482	57581482	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TIAM1	7074	genome.wustl.edu	37	21	32502549	32502549	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000210082	0	genome.wustl.edu	37	MT	2593	2593	+	RNA	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
XK	7504	genome.wustl.edu	37	X	37587534	37587534	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BCOR	54880	genome.wustl.edu	37	X	39921444	39921444	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16E-01	TCGA-D1-A16E-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PGK1	5230	genome.wustl.edu	37	X	77380399	77380399	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LAMP2	3920	genome.wustl.edu	37	X	119581762	119581762	+	Silent	SNP	A	A	C			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IFNA13	3447	genome.wustl.edu	37	9	21367853	21367853	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A16E-01	TCGA-D1-A16E-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DHX40	79665	genome.wustl.edu	37	17	57682855	57682855	+	Silent	SNP	T	T	C			TCGA-D1-A16E-01	TCGA-D1-A16E-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MBD3L5	284428	genome.wustl.edu	37	19	7030637	7030637	+	Silent	SNP	G	G	A			TCGA-D1-A16E-01	TCGA-D1-A16E-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178916917	178916919	+	In_Frame_Del	DEL	ATT	ATT	-			TCGA-D1-A16E-01	TCGA-D1-A16E-01	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
