Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
DISP1	84976	genome.wustl.edu	37	1	223116667	223116667	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ITPKB	3707	genome.wustl.edu	37	1	226923665	226923665	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OBSCN	84033	genome.wustl.edu	37	1	228403424	228403424	+	Silent	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR75	10936	genome.wustl.edu	37	2	54081345	54081345	+	Silent	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STK39	27347	genome.wustl.edu	37	2	168931652	168931652	+	Silent	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHL1	10752	genome.wustl.edu	37	3	431122	431122	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IL5RA	3568	genome.wustl.edu	37	3	3144358	3144358	+	Splice_Site	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DOCK3	1795	genome.wustl.edu	37	3	51350282	51350282	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
VGLL3	389136	genome.wustl.edu	37	3	87017746	87017746	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DCAF16	54876	genome.wustl.edu	37	4	17805219	17805219	+	Silent	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBXW7	55294	genome.wustl.edu	37	4	153249456	153249456	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FGA	2243	genome.wustl.edu	37	4	155508049	155508049	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAN1A1	4121	genome.wustl.edu	37	6	119628109	119628109	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C9orf93	203238	genome.wustl.edu	37	9	15874644	15874644	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRTAP5-10	387273	genome.wustl.edu	37	11	71276787	71276787	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPS8	2059	genome.wustl.edu	37	12	15774273	15774273	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENDOU	8909	genome.wustl.edu	37	12	48107062	48107062	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCYL2	55681	genome.wustl.edu	37	12	100709473	100709473	+	Silent	SNP	T	T	C			TCGA-D1-A16I-01	TCGA-D1-A16I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP11A	23250	genome.wustl.edu	37	13	113487173	113487173	+	Splice_Site	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AHNAK2	113146	genome.wustl.edu	37	14	105413132	105413132	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CA12	771	genome.wustl.edu	37	15	63632540	63632540	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLEKHO2	80301	genome.wustl.edu	37	15	65157204	65157204	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZKSCAN2	342357	genome.wustl.edu	37	16	25258239	25258239	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF594	84622	genome.wustl.edu	37	17	5085167	5085167	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7574034	7574034	+	Splice_Site	SNP	C	C	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CLDN17	26285	genome.wustl.edu	37	21	31538891	31538891	+	Silent	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TSPEAR	54084	genome.wustl.edu	37	21	45945583	45945583	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SRPX	8406	genome.wustl.edu	37	X	38016244	38016244	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ODZ1	10178	genome.wustl.edu	37	X	123518366	123518366	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BCORL1	63035	genome.wustl.edu	37	X	129139240	129139240	+	Silent	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FLG	2312	genome.wustl.edu	37	1	152275827	152275827	+	Silent	SNP	G	G	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STOX2	56977	genome.wustl.edu	37	4	184931824	184931824	+	Silent	SNP	C	C	G			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100132858	100132858	genome.wustl.edu	37	7	31439	31439	+	Splice_Site	SNP	T	T	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP5EP2	432369	genome.wustl.edu	37	13	28519519	28519519	+	Silent	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CEP128	145508	genome.wustl.edu	37	14	80993286	80993286	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOX5	79400	genome.wustl.edu	37	15	69325606	69325606	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A16I-01	TCGA-D1-A16I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NLRP8	126205	genome.wustl.edu	37	19	56481932	56481932	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF334	55713	genome.wustl.edu	37	20	45130951	45130951	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000211459	0	genome.wustl.edu	37	MT	737	737	+	RNA	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198786	0	genome.wustl.edu	37	MT	14003	14003	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16I-01	TCGA-D1-A16I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFCAB2	84288	genome.wustl.edu	37	1	245133623	245133624	+	Frame_Shift_Ins	INS	-	-	CCTCC			TCGA-D1-A16I-01	TCGA-D1-A16I-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBXW7	55294	genome.wustl.edu	37	4	153259012	153259013	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-D1-A16I-01	TCGA-D1-A16I-01	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZFHX3	463	genome.wustl.edu	37	16	72831055	72831079	+	Frame_Shift_Del	DEL	TGGGACCTGAACCTGAGCCTTCAGA	TGGGACCTGAACCTGAGCCTTCAGA	-			TCGA-D1-A16I-01	TCGA-D1-A16I-01	TGGGACCTGAACCTGAGCCTTCAGA	TGGGACCTGAACCTGAGCCTTCAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
