Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
PTCHD2	57540	genome.wustl.edu	37	1	11580754	11580754	+	Silent	SNP	C	C	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC729255	729255	genome.wustl.edu	37	1	53386404	53386404	+	RNA	SNP	A	A	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLMN	11146	genome.wustl.edu	37	1	92754482	92754482	+	Silent	SNP	T	T	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IPO9	55705	genome.wustl.edu	37	1	201843466	201843466	+	Silent	SNP	C	C	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLR1B	84172	genome.wustl.edu	37	2	113309368	113309368	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLB1L	79411	genome.wustl.edu	37	2	220107953	220107953	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DOCK10	55619	genome.wustl.edu	37	2	225740826	225740826	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TADA3	10474	genome.wustl.edu	37	3	9831273	9831273	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRAK1	22906	genome.wustl.edu	37	3	42264472	42264472	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLITRK3	22865	genome.wustl.edu	37	3	164907829	164907829	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTXN3	613212	genome.wustl.edu	37	5	126993261	126993261	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGA4	56111	genome.wustl.edu	37	5	140735922	140735922	+	Silent	SNP	T	T	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C5orf45	51149	genome.wustl.edu	37	5	179280247	179280247	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RIMS1	22999	genome.wustl.edu	37	6	73108753	73108753	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPB41L2	2037	genome.wustl.edu	37	6	131191021	131191021	+	Silent	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TAAR6	319100	genome.wustl.edu	37	6	132891535	132891535	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDCD2	5134	genome.wustl.edu	37	6	170892198	170892198	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDGFA	5154	genome.wustl.edu	37	7	540834	540834	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRKAR1B	5575	genome.wustl.edu	37	7	624198	624198	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HEATR2	54919	genome.wustl.edu	37	7	801433	801433	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRAT1	221927	genome.wustl.edu	37	7	2586990	2586990	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AKAP9	10142	genome.wustl.edu	37	7	91652174	91652174	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRRT4	401399	genome.wustl.edu	37	7	127999459	127999459	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOL8	55035	genome.wustl.edu	37	9	95063978	95063978	+	Silent	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOTCH1	4851	genome.wustl.edu	37	9	139402446	139402446	+	Silent	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DDX50	79009	genome.wustl.edu	37	10	70661146	70661146	+	Silent	SNP	T	T	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLCE1	51196	genome.wustl.edu	37	10	96043587	96043587	+	Silent	SNP	T	T	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
JAKMIP3	282973	genome.wustl.edu	37	10	133967268	133967268	+	Silent	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000221553	0	genome.wustl.edu	37	11	67700745	67700745	+	RNA	SNP	A	A	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGAP20	57569	genome.wustl.edu	37	11	110477468	110477468	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MANSC1	54682	genome.wustl.edu	37	12	12483036	12483036	+	Silent	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLCO1C1	53919	genome.wustl.edu	37	12	20893265	20893265	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TUBA1A	7846	genome.wustl.edu	37	12	49579493	49579493	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR6C65	403282	genome.wustl.edu	37	12	55794637	55794637	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTUS2	23281	genome.wustl.edu	37	13	30071441	30071441	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FOXO1	2308	genome.wustl.edu	37	13	41133979	41133979	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPTBN5	51332	genome.wustl.edu	37	15	42149884	42149884	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC440300	440300	genome.wustl.edu	37	15	84860071	84860071	+	RNA	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNG3	10368	genome.wustl.edu	37	16	24373179	24373179	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP6	9098	genome.wustl.edu	37	17	5038539	5038539	+	Silent	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAH2	146754	genome.wustl.edu	37	17	7678610	7678610	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C17orf28	283987	genome.wustl.edu	37	17	72951984	72951984	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SERPINB3	6317	genome.wustl.edu	37	18	61323250	61323250	+	Silent	SNP	A	A	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FFAR3	2865	genome.wustl.edu	37	19	35850313	35850313	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF574	64763	genome.wustl.edu	37	19	42585390	42585390	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC114	93233	genome.wustl.edu	37	19	48814869	48814869	+	Silent	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
JAG1	182	genome.wustl.edu	37	20	10639252	10639252	+	Silent	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FOXA2	3170	genome.wustl.edu	37	20	22563132	22563132	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP2D6	1565	genome.wustl.edu	37	22	42523581	42523581	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEB6	158809	genome.wustl.edu	37	X	26213018	26213018	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD5	26038	genome.wustl.edu	37	1	6194862	6194862	+	Silent	SNP	G	G	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIVEP3	59269	genome.wustl.edu	37	1	42048023	42048023	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ADAM15	8751	genome.wustl.edu	37	1	155034447	155034447	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC129	223075	genome.wustl.edu	37	7	31592725	31592725	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LIPN	643418	genome.wustl.edu	37	10	90537860	90537860	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRKD1	5587	genome.wustl.edu	37	14	30102132	30102132	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FHOD3	80206	genome.wustl.edu	37	18	34205670	34205670	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WNK3	65267	genome.wustl.edu	37	X	54319596	54319596	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CD1E	913	genome.wustl.edu	37	1	158324229	158324230	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D1-A17K-01	TCGA-D1-A17K-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PPFIA4	8497	genome.wustl.edu	37	1	203023240	203023241	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-D1-A17K-01	TCGA-D1-A17K-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRFIP1	9208	genome.wustl.edu	37	2	238672541	238672541	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NAA15	80155	genome.wustl.edu	37	4	140300008	140300008	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100129309	100129309	genome.wustl.edu	37	5	179366952	179366953	+	RNA	INS	-	-	T			TCGA-D1-A17K-01	TCGA-D1-A17K-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC25A45	283130	genome.wustl.edu	37	11	65143702	65143702	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D1-A17K-01	TCGA-D1-A17K-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM38A	9780	genome.wustl.edu	37	16	88800396	88800398	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-D1-A17K-01	TCGA-D1-A17K-01	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7578429	7578429	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D1-A17K-01	TCGA-D1-A17K-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYH7B	57644	genome.wustl.edu	37	20	33584940	33584940	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D1-A17K-01	TCGA-D1-A17K-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
