Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INSRR	3645	genome.wustl.edu	37	1	156823974	156823974	+	Silent	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR2B11	127623	genome.wustl.edu	37	1	247614762	247614762	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HS1BP3	64342	genome.wustl.edu	37	2	20845137	20845137	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CEP68	23177	genome.wustl.edu	37	2	65296771	65296771	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FIGLA	344018	genome.wustl.edu	37	2	71014860	71014860	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLCD4	84812	genome.wustl.edu	37	2	219487535	219487535	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATRIP	84126	genome.wustl.edu	37	3	48501272	48501272	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CEP97	79598	genome.wustl.edu	37	3	101476586	101476586	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC80	151887	genome.wustl.edu	37	3	112335607	112335607	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UPK1B	7348	genome.wustl.edu	37	3	118913098	118913098	+	Silent	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EHHADH	1962	genome.wustl.edu	37	3	184922447	184922447	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MSX1	4487	genome.wustl.edu	37	4	4864611	4864611	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
METTL14	57721	genome.wustl.edu	37	4	119626803	119626803	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POU4F2	5458	genome.wustl.edu	37	4	147561836	147561836	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RXFP3	51289	genome.wustl.edu	37	5	33937169	33937169	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MEGF10	84466	genome.wustl.edu	37	5	126732304	126732304	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA10	56139	genome.wustl.edu	37	5	140235814	140235814	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHB10	56126	genome.wustl.edu	37	5	140572937	140572937	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CAMK2A	815	genome.wustl.edu	37	5	149630366	149630366	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NQO2	4835	genome.wustl.edu	37	6	3019830	3019830	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SYNE1	23345	genome.wustl.edu	37	6	152539417	152539417	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IMPDH1	3614	genome.wustl.edu	37	7	128038592	128038592	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM135B	51059	genome.wustl.edu	37	8	139163511	139163511	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DENND4C	55667	genome.wustl.edu	37	9	19336368	19336368	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF462	58499	genome.wustl.edu	37	9	109687792	109687792	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF462	58499	genome.wustl.edu	37	9	109690479	109690479	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RC3H2	54542	genome.wustl.edu	37	9	125642036	125642036	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TTC16	158248	genome.wustl.edu	37	9	130489637	130489637	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SFXN3	81855	genome.wustl.edu	37	10	102798430	102798430	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CPXM2	119587	genome.wustl.edu	37	10	125539687	125539687	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR5A1	219982	genome.wustl.edu	37	11	59211092	59211092	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCG4	64137	genome.wustl.edu	37	11	119031662	119031662	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NLRX1	79671	genome.wustl.edu	37	11	119044726	119044726	+	Silent	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DDX54	79039	genome.wustl.edu	37	12	113612727	113612727	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WDR66	144406	genome.wustl.edu	37	12	122406048	122406048	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
VPS36	51028	genome.wustl.edu	37	13	53001185	53001185	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAX	4149	genome.wustl.edu	37	14	65544747	65544747	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMOC1	64093	genome.wustl.edu	37	14	70459136	70459136	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RYR3	6263	genome.wustl.edu	37	15	34060896	34060896	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPL3L	6123	genome.wustl.edu	37	16	1996980	1996980	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC728888	728888	genome.wustl.edu	37	16	29394565	29394565	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000226232	0	genome.wustl.edu	37	16	70010610	70010610	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TNFAIP1	7126	genome.wustl.edu	37	17	26668329	26668329	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYO19	80179	genome.wustl.edu	37	17	34852234	34852234	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPX	8288	genome.wustl.edu	37	17	56271331	56271331	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CEP192	55125	genome.wustl.edu	37	18	13056337	13056337	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ASXL3	80816	genome.wustl.edu	37	18	31326388	31326388	+	Silent	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C18orf54	162681	genome.wustl.edu	37	18	51888167	51888167	+	Silent	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRG1	116844	genome.wustl.edu	37	19	4538014	4538014	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TYK2	7297	genome.wustl.edu	37	19	10475379	10475379	+	Silent	SNP	C	C	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC27A1	376497	genome.wustl.edu	37	19	17599717	17599717	+	Silent	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SYMPK	8189	genome.wustl.edu	37	19	46333346	46333346	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRMT1	3276	genome.wustl.edu	37	19	50189361	50189361	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PREX1	57580	genome.wustl.edu	37	20	47273645	47273645	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SALL4	57167	genome.wustl.edu	37	20	50407891	50407891	+	Silent	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EIF3D	8664	genome.wustl.edu	37	22	36914916	36914916	+	Silent	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM9B	171483	genome.wustl.edu	37	X	9001030	9001030	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BEND2	139105	genome.wustl.edu	37	X	18189184	18189184	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFNB1	1947	genome.wustl.edu	37	X	68060379	68060379	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM70A	55026	genome.wustl.edu	37	X	119445139	119445139	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HCFC1	3054	genome.wustl.edu	37	X	153219157	153219157	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NBPF14	25832	genome.wustl.edu	37	1	148015713	148015713	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
S100A5	6276	genome.wustl.edu	37	1	153512666	153512666	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCA3	21	genome.wustl.edu	37	16	2328319	2328319	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OSBPL7	114881	genome.wustl.edu	37	17	45890716	45890716	+	Silent	SNP	G	G	A			TCGA-D1-A17L-01	TCGA-D1-A17L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000166007	0	genome.wustl.edu	37	11	55062037	55062038	+	In_Frame_Ins	INS	-	-	TGAGTA			TCGA-D1-A17L-01	TCGA-D1-A17L-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AMN	81693	genome.wustl.edu	37	14	103396967	103396968	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-D1-A17L-01	TCGA-D1-A17L-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBM39	9584	genome.wustl.edu	37	20	34297181	34297182	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D1-A17L-01	TCGA-D1-A17L-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
