Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
IL23R	149233	genome.wustl.edu	37	1	67635073	67635073	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SHC1	6464	genome.wustl.edu	37	1	154938892	154938892	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMG5	23381	genome.wustl.edu	37	1	156236063	156236063	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTPRC	5788	genome.wustl.edu	37	1	198703553	198703553	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRP1B	53353	genome.wustl.edu	37	2	141242991	141242991	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TUBA4B	80086	genome.wustl.edu	37	2	220135957	220135957	+	RNA	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FLJ45964	401040	genome.wustl.edu	37	2	240500083	240500083	+	RNA	SNP	C	C	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLS1	5357	genome.wustl.edu	37	3	142396911	142396911	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GMPS	8833	genome.wustl.edu	37	3	155611487	155611487	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FNDC3B	64778	genome.wustl.edu	37	3	172061888	172061888	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A17S-01	TCGA-D1-A17S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLRA3	8001	genome.wustl.edu	37	4	175598257	175598257	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ODZ3	55714	genome.wustl.edu	37	4	183714528	183714528	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRKAA1	5562	genome.wustl.edu	37	5	40764721	40764721	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BTN3A3	10384	genome.wustl.edu	37	6	26452317	26452317	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GARS	2617	genome.wustl.edu	37	7	30668230	30668230	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A17S-01	TCGA-D1-A17S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POU6F2	11281	genome.wustl.edu	37	7	39243867	39243867	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOTCH1	4851	genome.wustl.edu	37	9	139417591	139417591	+	Silent	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDH23	64072	genome.wustl.edu	37	10	73558192	73558192	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LUZP2	338645	genome.wustl.edu	37	11	24518841	24518841	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C1QTNF4	114900	genome.wustl.edu	37	11	47611543	47611543	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC727828	727828	genome.wustl.edu	37	11	89515631	89515631	+	RNA	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DYNC2H1	79659	genome.wustl.edu	37	11	103059234	103059234	+	Silent	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NTM	50863	genome.wustl.edu	37	11	132177634	132177634	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DYRK4	8798	genome.wustl.edu	37	12	4714162	4714162	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR19	2842	genome.wustl.edu	37	12	12815027	12815027	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYO16	23026	genome.wustl.edu	37	13	109707440	109707440	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PAPOLA	10914	genome.wustl.edu	37	14	97031314	97031314	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C15orf44	81556	genome.wustl.edu	37	15	65899518	65899518	+	Silent	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ALPK3	57538	genome.wustl.edu	37	15	85401200	85401200	+	Silent	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67654607	67654607	+	Missense_Mutation	SNP	A	A	C			TCGA-D1-A17S-01	TCGA-D1-A17S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CMIP	80790	genome.wustl.edu	37	16	81641227	81641227	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000168738	0	genome.wustl.edu	37	18	10855487	10855487	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C3	718	genome.wustl.edu	37	19	6710653	6710653	+	Silent	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL5A3	50509	genome.wustl.edu	37	19	10077059	10077059	+	Silent	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC644189	644189	genome.wustl.edu	37	19	36912831	36912831	+	RNA	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZIM2	23619	genome.wustl.edu	37	19	57286803	57286803	+	Silent	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C21orf88	114041	genome.wustl.edu	37	21	40969852	40969852	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LARGE	9215	genome.wustl.edu	37	22	33673046	33673046	+	Silent	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNG2	10369	genome.wustl.edu	37	22	36962420	36962420	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SHANK3	85358	genome.wustl.edu	37	22	51159751	51159751	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEE1	57692	genome.wustl.edu	37	X	75649041	75649041	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UPF3B	65109	genome.wustl.edu	37	X	118971920	118971920	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAP7D3	79649	genome.wustl.edu	37	X	135310849	135310849	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEA10	4109	genome.wustl.edu	37	X	151303895	151303895	+	Silent	SNP	T	T	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MICA	100507436	genome.wustl.edu	37	6	31379863	31379863	+	Silent	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR1K1	392392	genome.wustl.edu	37	9	125562840	125562840	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRIM8	81603	genome.wustl.edu	37	10	104404546	104404546	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198786	0	genome.wustl.edu	37	MT	12868	12868	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A17S-01	TCGA-D1-A17S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C5orf54	63920	genome.wustl.edu	37	5	159821019	159821020	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D1-A17S-01	TCGA-D1-A17S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNA1B	774	genome.wustl.edu	37	9	140772671	140772672	+	Splice_Site	INS	-	-	CC			TCGA-D1-A17S-01	TCGA-D1-A17S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89711966	89711967	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-D1-A17S-01	TCGA-D1-A17S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000250527	0	genome.wustl.edu	37	20	24911331	24911331	+	RNA	DEL	C	C	-			TCGA-D1-A17S-01	TCGA-D1-A17S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
