Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
SPOCD1	90853	genome.wustl.edu	37	1	32279606	32279606	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIGK	10026	genome.wustl.edu	37	1	77672356	77672356	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A053-01	TCGA-AP-A053-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCNC4	3749	genome.wustl.edu	37	1	110765724	110765724	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C1orf110	339512	genome.wustl.edu	37	1	162824730	162824730	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPS10P7	376693	genome.wustl.edu	37	1	201489272	201489272	+	RNA	SNP	C	C	G			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CAPN9	10753	genome.wustl.edu	37	1	230883454	230883454	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CEP170	9859	genome.wustl.edu	37	1	243327801	243327801	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEMA4F	10505	genome.wustl.edu	37	2	74901700	74901700	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATG7	10533	genome.wustl.edu	37	3	11468323	11468323	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF852	285346	genome.wustl.edu	37	3	44541759	44541759	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A053-01	TCGA-AP-A053-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TLR10	81793	genome.wustl.edu	37	4	38775102	38775102	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NPY5R	4889	genome.wustl.edu	37	4	164272660	164272660	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AP-A053-01	TCGA-AP-A053-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA7	56141	genome.wustl.edu	37	5	140216005	140216005	+	Silent	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAT2B	27430	genome.wustl.edu	37	5	162945356	162945356	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NSD1	64324	genome.wustl.edu	37	5	176637232	176637232	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA1949	170954	genome.wustl.edu	37	6	30647119	30647119	+	Silent	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TAAR8	83551	genome.wustl.edu	37	6	132874535	132874535	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C7orf25	79020	genome.wustl.edu	37	7	42949865	42949865	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR85	54329	genome.wustl.edu	37	7	112724695	112724695	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLF10	7071	genome.wustl.edu	37	8	103663816	103663816	+	Silent	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMARCA2	6595	genome.wustl.edu	37	9	2104095	2104095	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CAMK1D	57118	genome.wustl.edu	37	10	12867710	12867710	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA1217	56243	genome.wustl.edu	37	10	24833991	24833991	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM180	79847	genome.wustl.edu	37	10	104230835	104230835	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR51A4	401666	genome.wustl.edu	37	11	4967776	4967776	+	Silent	SNP	A	A	G			TCGA-AP-A053-01	TCGA-AP-A053-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR51A2	401667	genome.wustl.edu	37	11	4976389	4976389	+	Silent	SNP	A	A	G			TCGA-AP-A053-01	TCGA-AP-A053-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR52B2	255725	genome.wustl.edu	37	11	6190819	6190819	+	Silent	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MRVI1	10335	genome.wustl.edu	37	11	10603430	10603430	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHST1	8534	genome.wustl.edu	37	11	45671886	45671886	+	Silent	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR5A1	219982	genome.wustl.edu	37	11	59211290	59211290	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CLPB	81570	genome.wustl.edu	37	11	72005148	72005148	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGEF17	9828	genome.wustl.edu	37	11	73022287	73022287	+	Silent	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TAS2R14	50840	genome.wustl.edu	37	12	11090897	11090897	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RASAL1	8437	genome.wustl.edu	37	12	113559348	113559348	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MZT1	440145	genome.wustl.edu	37	13	73293116	73293116	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYCBP2	23077	genome.wustl.edu	37	13	77763183	77763183	+	Splice_Site	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PSEN1	5663	genome.wustl.edu	37	14	73659449	73659449	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A053-01	TCGA-AP-A053-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC440233	440233	genome.wustl.edu	37	15	23411025	23411025	+	RNA	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HERC2	8924	genome.wustl.edu	37	15	28467346	28467346	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A053-01	TCGA-AP-A053-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GSDMA	284110	genome.wustl.edu	37	17	38133276	38133276	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFTUD2	9343	genome.wustl.edu	37	17	42940095	42940095	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DHX40	79665	genome.wustl.edu	37	17	57682972	57682972	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TEX2	55852	genome.wustl.edu	37	17	62290313	62290313	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A053-01	TCGA-AP-A053-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000173213	0	genome.wustl.edu	37	18	49030	49030	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ELL	8178	genome.wustl.edu	37	19	18555601	18555601	+	Silent	SNP	G	G	A			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IL29	282618	genome.wustl.edu	37	19	39787191	39787191	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBE2V1	7335	genome.wustl.edu	37	20	48713345	48713345	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NFATC2	4773	genome.wustl.edu	37	20	50051757	50051757	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MT-CO2	0	genome.wustl.edu	37	MT	8227	8227	+	Silent	SNP	T	T	C			TCGA-AP-A053-01	TCGA-AP-A053-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198899	0	genome.wustl.edu	37	MT	8670	8670	+	Silent	SNP	A	A	G			TCGA-AP-A053-01	TCGA-AP-A053-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PABPC5	140886	genome.wustl.edu	37	X	90691600	90691600	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AP-A053-01	TCGA-AP-A053-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC645354	645354	genome.wustl.edu	37	1	13198883	13198883	+	RNA	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOM1	64434	genome.wustl.edu	37	7	156743023	156743023	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRIP1	83990	genome.wustl.edu	37	17	59871074	59871074	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A053-01	TCGA-AP-A053-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C5orf42	65250	genome.wustl.edu	37	5	37125420	37125423	+	Frame_Shift_Del	DEL	TTCT	TTCT	-			TCGA-AP-A053-01	TCGA-AP-A053-01	TTCT	TTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000246015	0	genome.wustl.edu	37	19	52895545	52895546	+	RNA	INS	-	-	TCTC			TCGA-AP-A053-01	TCGA-AP-A053-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TOP1P2	7152	genome.wustl.edu	37	22	25160593	25160598	+	RNA	DEL	GTGTGT	GTGTGT	-			TCGA-AP-A053-01	TCGA-AP-A053-01	GTGTGT	GTGTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MN1	4330	genome.wustl.edu	37	22	28196285	28196286	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AP-A053-01	TCGA-AP-A053-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
