Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
DCST1	149095	genome.wustl.edu	37	1	155014046	155014046	+	Silent	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC648822	648822	genome.wustl.edu	37	1	155120990	155120990	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACTN2	88	genome.wustl.edu	37	1	236918491	236918491	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC646050	646050	genome.wustl.edu	37	2	11448651	11448651	+	RNA	SNP	C	C	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGAP25	9938	genome.wustl.edu	37	2	69053219	69053219	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FLJ40330	645784	genome.wustl.edu	37	2	89084249	89084249	+	RNA	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178921552	178921552	+	Missense_Mutation	SNP	A	A	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PITX2	5308	genome.wustl.edu	37	4	111542361	111542361	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHB15	56121	genome.wustl.edu	37	5	140627002	140627002	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TCERG1	10915	genome.wustl.edu	37	5	145862223	145862223	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDE6A	5145	genome.wustl.edu	37	5	149313501	149313501	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRFN2	57497	genome.wustl.edu	37	6	40400623	40400623	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TSGA14	95681	genome.wustl.edu	37	7	130051012	130051012	+	Silent	SNP	G	G	C			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CBWD1	55871	genome.wustl.edu	37	9	154618	154618	+	Nonstop_Mutation	SNP	T	T	G			TCGA-AP-A05D-01	TCGA-AP-A05D-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HSPA5	3309	genome.wustl.edu	37	9	128003035	128003035	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC645954	645954	genome.wustl.edu	37	10	30974305	30974305	+	RNA	SNP	C	C	G			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C11orf48	79081	genome.wustl.edu	37	11	62430624	62430624	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CATSPER1	117144	genome.wustl.edu	37	11	65792818	65792818	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD4	1108	genome.wustl.edu	37	12	6701583	6701583	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRP6	4040	genome.wustl.edu	37	12	12339881	12339881	+	Missense_Mutation	SNP	A	A	C			TCGA-AP-A05D-01	TCGA-AP-A05D-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRT83	3889	genome.wustl.edu	37	12	52708439	52708439	+	Silent	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP15	9958	genome.wustl.edu	37	12	62783435	62783435	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC46A3	283537	genome.wustl.edu	37	13	29287613	29287613	+	Silent	SNP	T	T	C			TCGA-AP-A05D-01	TCGA-AP-A05D-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TLN2	83660	genome.wustl.edu	37	15	62942372	62942372	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000184730	0	genome.wustl.edu	37	16	28507445	28507445	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPGRIP1L	23322	genome.wustl.edu	37	16	53726272	53726272	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PPP2R1A	5518	genome.wustl.edu	37	19	52715971	52715971	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FOXA2	3170	genome.wustl.edu	37	20	22563345	22563345	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCML1	6322	genome.wustl.edu	37	X	17768092	17768092	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A05D-01	TCGA-AP-A05D-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDH19	57526	genome.wustl.edu	37	X	99551837	99551837	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GTF2B	2959	genome.wustl.edu	37	1	89325589	89325589	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRSS37	136242	genome.wustl.edu	37	7	141537752	141537752	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FIBP	9158	genome.wustl.edu	37	11	65653878	65653878	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288406	100288406	genome.wustl.edu	37	12	92505	92505	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF828	283489	genome.wustl.edu	37	13	115089640	115089640	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A05D-01	TCGA-AP-A05D-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STXBP2	6813	genome.wustl.edu	37	19	7704827	7704838	+	In_Frame_Del	DEL	TGTGTGTGCATG	TGTGTGTGCATG	-			TCGA-AP-A05D-01	TCGA-AP-A05D-01	TGTGTGTGCATG	TGTGTGTGCATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMC4	147798	genome.wustl.edu	37	19	54671947	54671961	+	In_Frame_Del	DEL	CAGGTAGGTGACCGC	CAGGTAGGTGACCGC	-			TCGA-AP-A05D-01	TCGA-AP-A05D-01	CAGGTAGGTGACCGC	CAGGTAGGTGACCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000197025	0	genome.wustl.edu	37	19	56889273	56889274	+	Frame_Shift_Ins	INS	-	-	AGTCCTTT			TCGA-AP-A05D-01	TCGA-AP-A05D-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NPBWR2	2832	genome.wustl.edu	37	20	62737797	62737799	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AP-A05D-01	TCGA-AP-A05D-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
