Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
MACF1	23499	genome.wustl.edu	37	1	39799147	39799147	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CD5L	922	genome.wustl.edu	37	1	157805895	157805895	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPTA1	6708	genome.wustl.edu	37	1	158581138	158581138	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NFASC	23114	genome.wustl.edu	37	1	204938040	204938040	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SOS1	6654	genome.wustl.edu	37	2	39281778	39281778	+	Missense_Mutation	SNP	T	T	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PSME4	23198	genome.wustl.edu	37	2	54152812	54152812	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC9A2	6549	genome.wustl.edu	37	2	103321076	103321076	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGEF4	50649	genome.wustl.edu	37	2	131785553	131785553	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLA2R1	22925	genome.wustl.edu	37	2	160804059	160804059	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	C			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CLDN16	10686	genome.wustl.edu	37	3	190127745	190127745	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC6A18	348932	genome.wustl.edu	37	5	1239640	1239640	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZFP57	346171	genome.wustl.edu	37	6	29640604	29640604	+	Silent	SNP	G	G	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZBTB22	9278	genome.wustl.edu	37	6	33283317	33283317	+	Silent	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100289453	100289453	genome.wustl.edu	37	8	42038127	42038127	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1L1	93035	genome.wustl.edu	37	8	110456917	110456917	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TLN1	7094	genome.wustl.edu	37	9	35724067	35724067	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC5B	727897	genome.wustl.edu	37	11	1269159	1269159	+	Silent	SNP	C	C	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR51Q1	390061	genome.wustl.edu	37	11	5443939	5443939	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR8G5	219865	genome.wustl.edu	37	11	124135564	124135564	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM45B	120224	genome.wustl.edu	37	11	129722531	129722531	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AICDA	57379	genome.wustl.edu	37	12	8757952	8757952	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RECQL	5965	genome.wustl.edu	37	12	21628401	21628401	+	Splice_Site	SNP	C	C	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IFT43	112752	genome.wustl.edu	37	14	76488697	76488697	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TJP1	7082	genome.wustl.edu	37	15	30012741	30012741	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRK1	79705	genome.wustl.edu	37	15	101566296	101566296	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC135	84229	genome.wustl.edu	37	16	57758674	57758674	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAH9	1770	genome.wustl.edu	37	17	11757668	11757668	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC37A	9884	genome.wustl.edu	37	17	44408582	44408582	+	Silent	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM59A	64762	genome.wustl.edu	37	18	29848108	29848108	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
B3GNT3	10331	genome.wustl.edu	37	19	17922419	17922419	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP25	29761	genome.wustl.edu	37	21	17202857	17202857	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPS6KA6	27330	genome.wustl.edu	37	X	83362040	83362040	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FRMPD3	84443	genome.wustl.edu	37	X	106844948	106844948	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTMR1	8776	genome.wustl.edu	37	X	149901034	149901034	+	Silent	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC4	4585	genome.wustl.edu	37	3	195512480	195512480	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA6	56142	genome.wustl.edu	37	5	140209500	140209500	+	Silent	SNP	G	G	C			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DECR2	26063	genome.wustl.edu	37	16	455003	455003	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CNGB1	1258	genome.wustl.edu	37	16	57921936	57921936	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EXOC3L1	283849	genome.wustl.edu	37	16	67218865	67218865	+	Silent	SNP	G	G	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PFKL	5211	genome.wustl.edu	37	21	45746762	45746762	+	RNA	SNP	G	G	A			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYBB	1536	genome.wustl.edu	37	X	37660563	37660563	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100131868	100131868	genome.wustl.edu	37	3	197362888	197362891	+	RNA	DEL	TCTT	TCTT	-			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	TCTT	TCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692903	89692903	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AP-A0LJ-01	TCGA-AP-A0LJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
