Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
SGIP1	84251	genome.wustl.edu	37	1	67206363	67206363	+	Missense_Mutation	SNP	T	T	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ST6GALNAC3	256435	genome.wustl.edu	37	1	76877834	76877834	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AMY1C	278	genome.wustl.edu	37	1	104297194	104297194	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SETDB1	9869	genome.wustl.edu	37	1	150936496	150936496	+	Missense_Mutation	SNP	T	T	G			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GABPB2	126626	genome.wustl.edu	37	1	151090500	151090500	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LAMC1	3915	genome.wustl.edu	37	1	183111747	183111747	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP2B4	493	genome.wustl.edu	37	1	203691729	203691729	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CNTNAP5	129684	genome.wustl.edu	37	2	124999812	124999812	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LCT	3938	genome.wustl.edu	37	2	136562373	136562373	+	Silent	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRKRA	8575	genome.wustl.edu	37	2	179306376	179306376	+	Silent	SNP	G	G	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LIMD1	8994	genome.wustl.edu	37	3	45637446	45637446	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP19	10869	genome.wustl.edu	37	3	49148196	49148196	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYH15	22989	genome.wustl.edu	37	3	108205290	108205290	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DMP1	1758	genome.wustl.edu	37	4	88583803	88583803	+	Silent	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NPR3	4883	genome.wustl.edu	37	5	32780847	32780847	+	Silent	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF366	167465	genome.wustl.edu	37	5	71756624	71756624	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHB7	56129	genome.wustl.edu	37	5	140554386	140554386	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IL22RA2	116379	genome.wustl.edu	37	6	137476207	137476207	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTPRD	5789	genome.wustl.edu	37	9	8331643	8331643	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RAPGEF1	2889	genome.wustl.edu	37	9	134467551	134467551	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRD3	8019	genome.wustl.edu	37	9	136901309	136901309	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANK3	288	genome.wustl.edu	37	10	61835222	61835222	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC440040	440040	genome.wustl.edu	37	11	49831648	49831648	+	RNA	SNP	C	C	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR5I1	10798	genome.wustl.edu	37	11	55703430	55703430	+	Silent	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC387820	387820	genome.wustl.edu	37	11	127811593	127811593	+	RNA	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNA1C	775	genome.wustl.edu	37	12	2788637	2788637	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD4	1108	genome.wustl.edu	37	12	6686952	6686952	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
H3F3C	440093	genome.wustl.edu	37	12	31944998	31944998	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTUS2	23281	genome.wustl.edu	37	13	29599207	29599207	+	Silent	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DACT1	51339	genome.wustl.edu	37	14	59113045	59113045	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PAPLN	89932	genome.wustl.edu	37	14	73719926	73719926	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RYR3	6263	genome.wustl.edu	37	15	34042429	34042429	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR1F1	4992	genome.wustl.edu	37	16	3255097	3255097	+	Missense_Mutation	SNP	T	T	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EIF3CL	728689	genome.wustl.edu	37	16	28403098	28403098	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WDR59	79726	genome.wustl.edu	37	16	74943479	74943479	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZBTB4	57659	genome.wustl.edu	37	17	7365800	7365800	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRPV2	51393	genome.wustl.edu	37	17	16332137	16332137	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ASXL3	80816	genome.wustl.edu	37	18	31314318	31314318	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDC37	11140	genome.wustl.edu	37	19	10504112	10504112	+	Silent	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RALGAPA2	57186	genome.wustl.edu	37	20	20610075	20610075	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DSCAM	1826	genome.wustl.edu	37	21	41725648	41725648	+	Silent	SNP	G	G	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCG1	9619	genome.wustl.edu	37	21	43708177	43708177	+	Missense_Mutation	SNP	G	G	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEZ6L	23544	genome.wustl.edu	37	22	26736414	26736414	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198804	0	genome.wustl.edu	37	MT	6346	6346	+	Missense_Mutation	SNP	T	T	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DCAF8L1	139425	genome.wustl.edu	37	X	27998092	27998092	+	Missense_Mutation	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP51	158880	genome.wustl.edu	37	X	55515340	55515340	+	Silent	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGEF9	23229	genome.wustl.edu	37	X	62885817	62885817	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288307	100288307	genome.wustl.edu	37	X	73393801	73393801	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LPAR4	2846	genome.wustl.edu	37	X	78011376	78011376	+	Missense_Mutation	SNP	A	A	G			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLUD2	2747	genome.wustl.edu	37	X	120183199	120183199	+	Missense_Mutation	SNP	G	G	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HTATSF1	27336	genome.wustl.edu	37	X	135579893	135579893	+	Missense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PGM3	5238	genome.wustl.edu	37	6	83892650	83892650	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF292	23036	genome.wustl.edu	37	6	87967133	87967133	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC442421	442421	genome.wustl.edu	37	9	66500877	66500877	+	RNA	SNP	T	T	G			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
QRFP	347148	genome.wustl.edu	37	9	133769001	133769001	+	Silent	SNP	C	C	T			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRADD	8717	genome.wustl.edu	37	16	67189310	67189310	+	Missense_Mutation	SNP	C	C	A			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATRN	8455	genome.wustl.edu	37	20	3543024	3543024	+	Missense_Mutation	SNP	C	C	G			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IARS2	55699	genome.wustl.edu	37	1	220279397	220279397	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC728615	728615	genome.wustl.edu	37	1	222641941	222641942	+	RNA	INS	-	-	C			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHB5	26167	genome.wustl.edu	37	5	140516080	140516080	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000249537	0	genome.wustl.edu	37	6	3713978	3713979	+	RNA	INS	-	-	TTTT			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89624237	89624240	+	Frame_Shift_Del	DEL	TCAT	TCAT	-			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	TCAT	TCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NYNRIN	57523	genome.wustl.edu	37	14	24877324	24877324	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AP-A0LN-01	TCGA-AP-A0LN-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
