Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
RPAP2	79871	genome.wustl.edu	37	1	92846378	92846378	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
VWA3B	200403	genome.wustl.edu	37	2	98866865	98866865	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FMNL2	114793	genome.wustl.edu	37	2	153431670	153431670	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PARD3B	117583	genome.wustl.edu	37	2	206364632	206364632	+	Silent	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPHKAP	80309	genome.wustl.edu	37	2	228881457	228881457	+	Silent	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL7A1	1294	genome.wustl.edu	37	3	48629186	48629186	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000238636	0	genome.wustl.edu	37	3	154047542	154047542	+	RNA	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AX-A05T-01	TCGA-AX-A05T-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TBC1D14	57533	genome.wustl.edu	37	4	7011634	7011634	+	Missense_Mutation	SNP	A	A	G			TCGA-AX-A05T-01	TCGA-AX-A05T-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPHA5	2044	genome.wustl.edu	37	4	66286238	66286238	+	Missense_Mutation	SNP	T	T	C			TCGA-AX-A05T-01	TCGA-AX-A05T-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA7	56141	genome.wustl.edu	37	5	140214265	140214265	+	Silent	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM14B	81853	genome.wustl.edu	37	6	10755447	10755447	+	Missense_Mutation	SNP	G	G	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIST1H2BN	8341	genome.wustl.edu	37	6	27806644	27806644	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HLA-J	3137	genome.wustl.edu	37	6	29974387	29974387	+	RNA	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RGL2	5863	genome.wustl.edu	37	6	33261826	33261826	+	Missense_Mutation	SNP	A	A	C			TCGA-AX-A05T-01	TCGA-AX-A05T-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GSTA5	221357	genome.wustl.edu	37	6	52698998	52698998	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DAGLB	221955	genome.wustl.edu	37	7	6487453	6487453	+	Silent	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTCH1	5727	genome.wustl.edu	37	9	98231085	98231085	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TIMM23	100287932	genome.wustl.edu	37	10	51620376	51620376	+	Missense_Mutation	SNP	C	C	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR8J3	81168	genome.wustl.edu	37	11	55905082	55905082	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC55	219527	genome.wustl.edu	37	11	56949971	56949971	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNND1	1500	genome.wustl.edu	37	11	57564253	57564253	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
STIP1	10963	genome.wustl.edu	37	11	63971590	63971590	+	Missense_Mutation	SNP	A	A	G			TCGA-AX-A05T-01	TCGA-AX-A05T-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PZP	5858	genome.wustl.edu	37	12	9333602	9333602	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMTC1	83857	genome.wustl.edu	37	12	29911684	29911684	+	Silent	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRP1	4035	genome.wustl.edu	37	12	57589116	57589116	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MED13L	23389	genome.wustl.edu	37	12	116399194	116399194	+	Silent	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C13orf30	144809	genome.wustl.edu	37	13	43362778	43362778	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CAB39L	81617	genome.wustl.edu	37	13	49884970	49884970	+	Missense_Mutation	SNP	A	A	C			TCGA-AX-A05T-01	TCGA-AX-A05T-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDH17	27253	genome.wustl.edu	37	13	58208384	58208384	+	Silent	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C15orf2	23742	genome.wustl.edu	37	15	24923617	24923617	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
XYLT1	64131	genome.wustl.edu	37	16	17232349	17232349	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000250616	0	genome.wustl.edu	37	16	30116160	30116160	+	RNA	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLG1	2734	genome.wustl.edu	37	16	74486876	74486876	+	RNA	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TEKT1	83659	genome.wustl.edu	37	17	6718541	6718541	+	Silent	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DHRS13	147015	genome.wustl.edu	37	17	27225678	27225678	+	Silent	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CSF3	1440	genome.wustl.edu	37	17	38173151	38173151	+	Missense_Mutation	SNP	C	C	G			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC644253	644253	genome.wustl.edu	37	17	44321680	44321680	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100289681	100289681	genome.wustl.edu	37	17	73269589	73269589	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LINC00338	654434	genome.wustl.edu	37	17	75085255	75085255	+	RNA	SNP	A	A	G			TCGA-AX-A05T-01	TCGA-AX-A05T-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPB41L3	23136	genome.wustl.edu	37	18	5419890	5419890	+	Silent	SNP	A	A	G			TCGA-AX-A05T-01	TCGA-AX-A05T-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C18orf26	284254	genome.wustl.edu	37	18	52265328	52265328	+	Silent	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100129800	100129800	genome.wustl.edu	37	19	35034325	35034325	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RINL	126432	genome.wustl.edu	37	19	39360003	39360003	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UQCC	55245	genome.wustl.edu	37	20	33935061	33935061	+	Missense_Mutation	SNP	C	C	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEZ6L	23544	genome.wustl.edu	37	22	26747088	26747088	+	Silent	SNP	G	G	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000233794	0	genome.wustl.edu	37	GL000225.1	78925	78925	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000233794	0	genome.wustl.edu	37	GL000225.1	79120	79120	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198888	0	genome.wustl.edu	37	MT	3982	3982	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198763	0	genome.wustl.edu	37	MT	5140	5140	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198786	0	genome.wustl.edu	37	MT	13124	13124	+	Missense_Mutation	SNP	T	T	C			TCGA-AX-A05T-01	TCGA-AX-A05T-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DDX53	168400	genome.wustl.edu	37	X	23018495	23018495	+	Silent	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SHROOM4	57477	genome.wustl.edu	37	X	50376992	50376992	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZDHHC15	158866	genome.wustl.edu	37	X	74698740	74698740	+	Missense_Mutation	SNP	G	G	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLHL4	56062	genome.wustl.edu	37	X	86877347	86877347	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
XPNPEP2	7512	genome.wustl.edu	37	X	128876140	128876140	+	Missense_Mutation	SNP	T	T	C			TCGA-AX-A05T-01	TCGA-AX-A05T-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000201898	0	genome.wustl.edu	37	1	224367393	224367393	+	RNA	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM127	55654	genome.wustl.edu	37	2	96919740	96919740	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTTNBP2	83992	genome.wustl.edu	37	7	117364737	117364737	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRIT1	26103	genome.wustl.edu	37	10	85993904	85993904	+	Missense_Mutation	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MOAP1	64112	genome.wustl.edu	37	14	93650120	93650120	+	Silent	SNP	G	G	C			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MFNG	4242	genome.wustl.edu	37	22	37876232	37876232	+	Missense_Mutation	SNP	C	C	T			TCGA-AX-A05T-01	TCGA-AX-A05T-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000211459	0	genome.wustl.edu	37	MT	1574	1574	+	RNA	SNP	G	G	A			TCGA-AX-A05T-01	TCGA-AX-A05T-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27094331	27094332	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-AX-A05T-01	TCGA-AX-A05T-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89653796	89653798	+	In_Frame_Del	DEL	ATT	ATT	-			TCGA-AX-A05T-01	TCGA-AX-A05T-01	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67645502	67645506	+	Frame_Shift_Del	DEL	AAATT	AAATT	-			TCGA-AX-A05T-01	TCGA-AX-A05T-01	AAATT	AAATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100293526	100293526	genome.wustl.edu	37	X	2631442	2631445	+	Frame_Shift_Del	DEL	ACAT	ACAT	-			TCGA-AX-A05T-01	TCGA-AX-A05T-01	ACAT	ACAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
