Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CSMD2	114784	genome.wustl.edu	37	1	33985238	33985238	+	Silent	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CSMD2	114784	genome.wustl.edu	37	1	34052715	34052715	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTPRF	5792	genome.wustl.edu	37	1	44086249	44086249	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
B4GALT2	8704	genome.wustl.edu	37	1	44456099	44456099	+	Silent	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRIQ3	127255	genome.wustl.edu	37	1	74507410	74507410	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POGZ	23126	genome.wustl.edu	37	1	151381039	151381039	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR2M2	391194	genome.wustl.edu	37	1	248343317	248343317	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CNTNAP5	129684	genome.wustl.edu	37	2	125660527	125660527	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
METTL8	79828	genome.wustl.edu	37	2	172182370	172182370	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLEKHA3	65977	genome.wustl.edu	37	2	179365846	179365846	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FSIP2	401024	genome.wustl.edu	37	2	186696541	186696541	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC108	255101	genome.wustl.edu	37	2	219892311	219892311	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NKTR	4820	genome.wustl.edu	37	3	42678523	42678523	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF445	353274	genome.wustl.edu	37	3	44489433	44489433	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIGG	54872	genome.wustl.edu	37	4	520995	520995	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WHSC1	7468	genome.wustl.edu	37	4	1955184	1955184	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC729862	729862	genome.wustl.edu	37	5	28927597	28927597	+	RNA	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HSPA4	3308	genome.wustl.edu	37	5	132425285	132425285	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRPC7	57113	genome.wustl.edu	37	5	135692432	135692432	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC642590	642590	genome.wustl.edu	37	6	71318574	71318574	+	RNA	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SGK1	6446	genome.wustl.edu	37	6	134494209	134494209	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC728416	728416	genome.wustl.edu	37	7	56804101	56804101	+	Missense_Mutation	SNP	A	A	C			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RELN	5649	genome.wustl.edu	37	7	103236992	103236992	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TPI1P2	286016	genome.wustl.edu	37	7	128696180	128696180	+	RNA	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP17L1P	401447	genome.wustl.edu	37	8	7191381	7191381	+	Silent	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL22A1	169044	genome.wustl.edu	37	8	139890007	139890007	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRUNE2	158471	genome.wustl.edu	37	9	79259686	79259686	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEMA4D	10507	genome.wustl.edu	37	9	91994306	91994306	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C9orf140	89958	genome.wustl.edu	37	9	139960056	139960056	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FGFR2	2263	genome.wustl.edu	37	10	123325027	123325027	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR51T1	401665	genome.wustl.edu	37	11	4903499	4903499	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPRYD5	84767	genome.wustl.edu	37	11	55653041	55653041	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DYNC2H1	79659	genome.wustl.edu	37	11	103026116	103026116	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCNA5	3741	genome.wustl.edu	37	12	5153857	5153857	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHC1B	653441	genome.wustl.edu	37	12	55806565	55806565	+	Silent	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR6C4	341418	genome.wustl.edu	37	12	55945194	55945194	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SGCG	6445	genome.wustl.edu	37	13	23894792	23894792	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATP8A2	51761	genome.wustl.edu	37	13	26343298	26343298	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL4A2	1284	genome.wustl.edu	37	13	111160399	111160399	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SIPA1L1	26037	genome.wustl.edu	37	14	72139332	72139332	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IGHV2-5	28457	genome.wustl.edu	37	14	106494557	106494557	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP6	9098	genome.wustl.edu	37	17	5074102	5074102	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPOP	8405	genome.wustl.edu	37	17	47696639	47696639	+	Missense_Mutation	SNP	T	T	G			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLK5	25818	genome.wustl.edu	37	19	51446942	51446942	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NHS	4810	genome.wustl.edu	37	X	17750487	17750487	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZC3H12B	340554	genome.wustl.edu	37	X	64717130	64717130	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC25A34	284723	genome.wustl.edu	37	1	16064650	16064650	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBR3	130507	genome.wustl.edu	37	2	170815027	170815027	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBR2	23304	genome.wustl.edu	37	6	42641554	42641554	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SIM1	6492	genome.wustl.edu	37	6	100841613	100841613	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC136	64753	genome.wustl.edu	37	7	128457826	128457826	+	Silent	SNP	C	C	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTPN	136319	genome.wustl.edu	37	7	135614721	135614721	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CPT1A	1374	genome.wustl.edu	37	11	68530096	68530096	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATXN2	6311	genome.wustl.edu	37	12	111948236	111948236	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NALCN	259232	genome.wustl.edu	37	13	101833649	101833649	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DHRS7	51635	genome.wustl.edu	37	14	60616839	60616839	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GSG2	83903	genome.wustl.edu	37	17	3628867	3628867	+	Silent	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYO15A	51168	genome.wustl.edu	37	17	18045435	18045435	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TANC2	26115	genome.wustl.edu	37	17	61492980	61492980	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INPP5J	27124	genome.wustl.edu	37	22	31523364	31523364	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARR3	407	genome.wustl.edu	37	X	69500109	69500109	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M7-01	TCGA-BG-A0M7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
