Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARID1A	8289	genome.wustl.edu	37	1	27097802	27097802	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CRNN	49860	genome.wustl.edu	37	1	152382933	152382933	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEC16B	89866	genome.wustl.edu	37	1	177929518	177929518	+	Missense_Mutation	SNP	T	T	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLA2G4A	5321	genome.wustl.edu	37	1	186839609	186839609	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MARK1	4139	genome.wustl.edu	37	1	220809358	220809358	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC164	92749	genome.wustl.edu	37	2	26678039	26678039	+	Missense_Mutation	SNP	A	A	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC150	284992	genome.wustl.edu	37	2	197597262	197597262	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACCN4	55515	genome.wustl.edu	37	2	220396780	220396780	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC643387	643387	genome.wustl.edu	37	2	239140965	239140965	+	RNA	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCN10A	6336	genome.wustl.edu	37	3	38802218	38802218	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCN11A	11280	genome.wustl.edu	37	3	38950678	38950678	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAP4	4134	genome.wustl.edu	37	3	47951630	47951630	+	Silent	SNP	A	A	G			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178916933	178916933	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288914	100288914	genome.wustl.edu	37	4	103655550	103655550	+	Silent	SNP	G	G	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA0922	23240	genome.wustl.edu	37	4	154544192	154544192	+	Silent	SNP	G	G	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MFAP3	4238	genome.wustl.edu	37	5	153429189	153429189	+	RNA	SNP	C	C	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EXOC2	55770	genome.wustl.edu	37	6	633084	633084	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIST1H2AG	8969	genome.wustl.edu	37	6	27101174	27101174	+	Silent	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CSMD1	64478	genome.wustl.edu	37	8	4277514	4277514	+	Missense_Mutation	SNP	A	A	C			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NRG1	3084	genome.wustl.edu	37	8	32505615	32505615	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRPM3	80036	genome.wustl.edu	37	9	73150942	73150942	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ITGA8	8516	genome.wustl.edu	37	10	15730038	15730038	+	Splice_Site	SNP	C	C	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA1217	56243	genome.wustl.edu	37	10	24809086	24809086	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692961	89692961	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TDRD1	56165	genome.wustl.edu	37	10	115961251	115961251	+	Silent	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC22A8	9376	genome.wustl.edu	37	11	62782228	62782228	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ITPR2	3709	genome.wustl.edu	37	12	26572096	26572096	+	Silent	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CKAP4	10970	genome.wustl.edu	37	12	106632986	106632986	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZCCHC8	55596	genome.wustl.edu	37	12	122958508	122958508	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FRY	10129	genome.wustl.edu	37	13	32698450	32698450	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SETDB2	83852	genome.wustl.edu	37	13	50055186	50055186	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ING1	3621	genome.wustl.edu	37	13	111372127	111372127	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BAG5	9529	genome.wustl.edu	37	14	104026329	104026329	+	Silent	SNP	G	G	C			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM92A1P1	729073	genome.wustl.edu	37	15	41456051	41456051	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRTG	283659	genome.wustl.edu	37	15	55921130	55921130	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67645273	67645273	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZBTB4	57659	genome.wustl.edu	37	17	7366743	7366743	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ITGA3	3675	genome.wustl.edu	37	17	48166613	48166613	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BRIP1	83990	genome.wustl.edu	37	17	59858343	59858343	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SSTR2	6752	genome.wustl.edu	37	17	71165967	71165967	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LMAN1	3998	genome.wustl.edu	37	18	57006155	57006155	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LGI4	163175	genome.wustl.edu	37	19	35616204	35616204	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RYR1	6261	genome.wustl.edu	37	19	38956903	38956903	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP2B7P1	1556	genome.wustl.edu	37	19	41447340	41447340	+	RNA	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC8A2	6543	genome.wustl.edu	37	19	47941145	47941145	+	Silent	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EIF6	3692	genome.wustl.edu	37	20	33868572	33868572	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DHX35	60625	genome.wustl.edu	37	20	37652346	37652346	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DIP2A	23181	genome.wustl.edu	37	21	47931424	47931424	+	Silent	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCT8L2	150160	genome.wustl.edu	37	22	17072267	17072267	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GTPBP1	9567	genome.wustl.edu	37	22	39111959	39111959	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TNRC6B	23112	genome.wustl.edu	37	22	40661483	40661483	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFCAB6	64800	genome.wustl.edu	37	22	43950818	43950818	+	Silent	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000211459	0	genome.wustl.edu	37	MT	874	874	+	RNA	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLCXD1	55344	genome.wustl.edu	37	X	205502	205502	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SHROOM4	57477	genome.wustl.edu	37	X	50350500	50350500	+	Silent	SNP	A	A	G			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC389873	389873	genome.wustl.edu	37	X	72990127	72990127	+	RNA	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDH19	57526	genome.wustl.edu	37	X	99663256	99663256	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PAK3	5063	genome.wustl.edu	37	X	110416268	110416268	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MCF2	4168	genome.wustl.edu	37	X	138672082	138672082	+	Missense_Mutation	SNP	T	T	G			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEA5	4104	genome.wustl.edu	37	X	151283933	151283933	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GORAB	92344	genome.wustl.edu	37	1	170521202	170521202	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DNAH8	1769	genome.wustl.edu	37	6	38718264	38718265	+	Frame_Shift_Ins	INS	-	-	TGGA			TCGA-BG-A0M9-01	TCGA-BG-A0M9-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
