Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
HNRNPR	10236	genome.wustl.edu	37	1	23640197	23640197	+	Splice_Site	SNP	T	T	C			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MACF1	23499	genome.wustl.edu	37	1	39826512	39826512	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TSNAX	7257	genome.wustl.edu	37	1	231696950	231696950	+	Silent	SNP	T	T	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HNRNPU	3192	genome.wustl.edu	37	1	245023703	245023703	+	Silent	SNP	A	A	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPEG	10290	genome.wustl.edu	37	2	220353828	220353828	+	Silent	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNA1D	776	genome.wustl.edu	37	3	53752758	53752758	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLITRK3	22865	genome.wustl.edu	37	3	164906467	164906467	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZBBX	79740	genome.wustl.edu	37	3	167000093	167000093	+	Missense_Mutation	SNP	A	A	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC4	4585	genome.wustl.edu	37	3	195509559	195509559	+	Silent	SNP	G	G	C			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC4	4585	genome.wustl.edu	37	3	195509560	195509560	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACOX3	8310	genome.wustl.edu	37	4	8368786	8368786	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TARS	6897	genome.wustl.edu	37	5	33453447	33453447	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA7	56141	genome.wustl.edu	37	5	140215138	140215138	+	Silent	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FGFR4	2264	genome.wustl.edu	37	5	176517988	176517988	+	Silent	SNP	A	A	G			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZFP2	80108	genome.wustl.edu	37	5	178359647	178359647	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CD83	9308	genome.wustl.edu	37	6	14135349	14135349	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TFAP2B	7021	genome.wustl.edu	37	6	50807914	50807914	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FRK	2444	genome.wustl.edu	37	6	116264288	116264288	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL28A1	340267	genome.wustl.edu	37	7	7472129	7472129	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDP1	54704	genome.wustl.edu	37	8	94935750	94935750	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRPM6	140803	genome.wustl.edu	37	9	77457246	77457246	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL27A1	85301	genome.wustl.edu	37	9	117047052	117047052	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR158	57512	genome.wustl.edu	37	10	25886793	25886793	+	Silent	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FGFR2	2263	genome.wustl.edu	37	10	123258070	123258070	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR8I2	120586	genome.wustl.edu	37	11	55861593	55861593	+	Silent	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SIK3	23387	genome.wustl.edu	37	11	116729044	116729044	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
APAF1	317	genome.wustl.edu	37	12	99053093	99053093	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP12	219333	genome.wustl.edu	37	13	27669856	27669856	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HSP90AA1	3320	genome.wustl.edu	37	14	102550273	102550273	+	Missense_Mutation	SNP	A	A	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TNFRSF13B	23495	genome.wustl.edu	37	17	16843751	16843751	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDC27	996	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ONECUT2	9480	genome.wustl.edu	37	18	55143729	55143729	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF554	115196	genome.wustl.edu	37	19	2827635	2827635	+	Silent	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBN3	84467	genome.wustl.edu	37	19	8181660	8181660	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF566	84924	genome.wustl.edu	37	19	36940118	36940118	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF551	90233	genome.wustl.edu	37	19	58199629	58199629	+	Silent	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TTC38	55020	genome.wustl.edu	37	22	46677541	46677541	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198804	0	genome.wustl.edu	37	MT	5910	5910	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IRS4	8471	genome.wustl.edu	37	X	107975876	107975876	+	Silent	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
L1CAM	3897	genome.wustl.edu	37	X	153135017	153135017	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SRGAP2	23380	genome.wustl.edu	37	1	206566143	206566143	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF618	114991	genome.wustl.edu	37	9	116811597	116811597	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CARD9	64170	genome.wustl.edu	37	9	139261276	139261276	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDHR1	92211	genome.wustl.edu	37	10	85974275	85974275	+	Silent	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FGFR2	2263	genome.wustl.edu	37	10	123247516	123247516	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC728196	728196	genome.wustl.edu	37	11	111383756	111383756	+	RNA	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM189A1	23359	genome.wustl.edu	37	15	29415617	29415617	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ELAVL3	1995	genome.wustl.edu	37	19	11569297	11569297	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TPTE	7179	genome.wustl.edu	37	21	10914442	10914442	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DIMT1	27292	genome.wustl.edu	37	5	61694325	61694326	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89712001	89712001	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MLL2	8085	genome.wustl.edu	37	12	49440427	49440427	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
