Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
HSPG2	3339	genome.wustl.edu	37	1	22161377	22161377	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AIM1L	55057	genome.wustl.edu	37	1	26650667	26650667	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID1A	8289	genome.wustl.edu	37	1	27099947	27099947	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZMPSTE24	10269	genome.wustl.edu	37	1	40758147	40758147	+	Missense_Mutation	SNP	C	C	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SZT2	23334	genome.wustl.edu	37	1	43904411	43904411	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPF1	80135	genome.wustl.edu	37	1	84945031	84945031	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CELSR2	1952	genome.wustl.edu	37	1	109812174	109812174	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPTA1	6708	genome.wustl.edu	37	1	158627401	158627401	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3C2B	5287	genome.wustl.edu	37	1	204438551	204438551	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDK18	5129	genome.wustl.edu	37	1	205498505	205498505	+	Missense_Mutation	SNP	A	A	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RYR2	6262	genome.wustl.edu	37	1	237617760	237617760	+	Silent	SNP	A	A	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100130331	100130331	genome.wustl.edu	37	1	238090087	238090087	+	RNA	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BG-A18A-01	TCGA-BG-A18A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CENPE	1062	genome.wustl.edu	37	4	104070072	104070072	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RXFP3	51289	genome.wustl.edu	37	5	33937741	33937741	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288462	100288462	genome.wustl.edu	37	5	41870604	41870604	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIST1H2BI	8346	genome.wustl.edu	37	6	26273260	26273260	+	Silent	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLH	5429	genome.wustl.edu	37	6	43581941	43581941	+	Missense_Mutation	SNP	T	T	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRAM2	9697	genome.wustl.edu	37	6	52370412	52370412	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TCF21	6943	genome.wustl.edu	37	6	134210685	134210685	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PBK	55872	genome.wustl.edu	37	8	27679999	27679999	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C8orf83	286144	genome.wustl.edu	37	8	93904266	93904266	+	Missense_Mutation	SNP	C	C	G			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
VPS13B	157680	genome.wustl.edu	37	8	100673680	100673680	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PABPC1	26986	genome.wustl.edu	37	8	101730064	101730064	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CSMD3	114788	genome.wustl.edu	37	8	113519049	113519049	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INSL4	3641	genome.wustl.edu	37	9	5233806	5233806	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GNE	10020	genome.wustl.edu	37	9	36217419	36217419	+	Silent	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MORN5	254956	genome.wustl.edu	37	9	124936902	124936902	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C10orf18	54906	genome.wustl.edu	37	10	5789003	5789003	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBP3	5949	genome.wustl.edu	37	10	48383962	48383962	+	Silent	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
WDFY4	57705	genome.wustl.edu	37	10	50028335	50028335	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692996	89692996	+	Silent	SNP	C	C	G			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HTR7	3363	genome.wustl.edu	37	10	92508669	92508669	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR52W1	120787	genome.wustl.edu	37	11	6220833	6220833	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC43A1	8501	genome.wustl.edu	37	11	57256834	57256834	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NAALADL1	10004	genome.wustl.edu	37	11	64820735	64820735	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GRIN2B	2904	genome.wustl.edu	37	12	13715927	13715927	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PYROXD1	79912	genome.wustl.edu	37	12	21605039	21605039	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLHDC5	57542	genome.wustl.edu	37	12	27950717	27950717	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MON2	23041	genome.wustl.edu	37	12	62926421	62926421	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TCTN2	79867	genome.wustl.edu	37	12	124158223	124158223	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLE	5426	genome.wustl.edu	37	12	133237689	133237689	+	Missense_Mutation	SNP	G	G	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FLT3	2322	genome.wustl.edu	37	13	28636099	28636099	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KATNAL1	84056	genome.wustl.edu	37	13	30829608	30829608	+	Silent	SNP	A	A	G			TCGA-BG-A18A-01	TCGA-BG-A18A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NBEA	26960	genome.wustl.edu	37	13	35619115	35619115	+	Silent	SNP	C	C	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR10G2	26534	genome.wustl.edu	37	14	22102439	22102439	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EML1	2009	genome.wustl.edu	37	14	100367320	100367320	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM98B	283742	genome.wustl.edu	37	15	38766434	38766434	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HERC1	8925	genome.wustl.edu	37	15	63901410	63901410	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRC49	54839	genome.wustl.edu	37	15	71276521	71276521	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBXO22	26263	genome.wustl.edu	37	15	76206487	76206487	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHKG2	5261	genome.wustl.edu	37	16	30767997	30767997	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBE2MP1	606551	genome.wustl.edu	37	16	34404344	34404344	+	RNA	SNP	G	G	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C17orf76-AS1	125144	genome.wustl.edu	37	17	16342622	16342622	+	RNA	SNP	G	G	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LSM12	124801	genome.wustl.edu	37	17	42117582	42117582	+	Missense_Mutation	SNP	G	G	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC729774	729774	genome.wustl.edu	37	18	14361688	14361688	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOL4	8715	genome.wustl.edu	37	18	31538220	31538220	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GIPC1	10755	genome.wustl.edu	37	19	14589340	14589340	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DDX49	54555	genome.wustl.edu	37	19	19035727	19035727	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOVA2	4858	genome.wustl.edu	37	19	46457128	46457128	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FOXA2	3170	genome.wustl.edu	37	20	22563165	22563165	+	Missense_Mutation	SNP	A	A	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DHX35	60625	genome.wustl.edu	37	20	37617472	37617472	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NCAM2	4685	genome.wustl.edu	37	21	22804570	22804570	+	Silent	SNP	C	C	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ERG	2078	genome.wustl.edu	37	21	39763612	39763612	+	Silent	SNP	C	C	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LSS	4047	genome.wustl.edu	37	21	47630623	47630623	+	Silent	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000211459	0	genome.wustl.edu	37	MT	1552	1552	+	RNA	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198804	0	genome.wustl.edu	37	MT	5920	5920	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198804	0	genome.wustl.edu	37	MT	6069	6069	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000212907	0	genome.wustl.edu	37	MT	10584	10584	+	Missense_Mutation	SNP	T	T	C			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF645	158506	genome.wustl.edu	37	X	22291376	22291376	+	Missense_Mutation	SNP	T	T	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYSLTR1	10800	genome.wustl.edu	37	X	77528547	77528547	+	Missense_Mutation	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMARCA1	6594	genome.wustl.edu	37	X	128624133	128624133	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC644717	644717	genome.wustl.edu	37	X	134811969	134811969	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEA6	4105	genome.wustl.edu	37	X	151870061	151870061	+	Missense_Mutation	SNP	G	G	A			TCGA-BG-A18A-01	TCGA-BG-A18A-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NES	10763	genome.wustl.edu	37	1	156639378	156639378	+	Missense_Mutation	SNP	A	A	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYH7	4625	genome.wustl.edu	37	14	23886119	23886119	+	Silent	SNP	C	C	T			TCGA-BG-A18A-01	TCGA-BG-A18A-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RPL36A	6173	genome.wustl.edu	37	X	100650475	100650475	+	Silent	SNP	T	T	G			TCGA-BG-A18A-01	TCGA-BG-A18A-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692986	89692989	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BG-A18A-01	TCGA-BG-A18A-01	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
