Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
LPPR4	9890	genome.wustl.edu	37	1	99753536	99753536	+	Missense_Mutation	SNP	T	T	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CD1E	913	genome.wustl.edu	37	1	158324220	158324220	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR75	10936	genome.wustl.edu	37	2	54081461	54081461	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC88A	55704	genome.wustl.edu	37	2	55559789	55559789	+	Missense_Mutation	SNP	T	T	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM150A	129303	genome.wustl.edu	37	2	85827094	85827094	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CNTN4	152330	genome.wustl.edu	37	3	3067958	3067958	+	Silent	SNP	A	A	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TOPBP1	11073	genome.wustl.edu	37	3	133342956	133342956	+	Silent	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178948044	178948044	+	Missense_Mutation	SNP	A	A	G			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GABRA4	2557	genome.wustl.edu	37	4	46973109	46973109	+	Missense_Mutation	SNP	T	T	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288413	100288413	genome.wustl.edu	37	4	53611679	53611679	+	Silent	SNP	G	G	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC644578	644578	genome.wustl.edu	37	4	64215845	64215845	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IL2	3558	genome.wustl.edu	37	4	123374885	123374885	+	Missense_Mutation	SNP	C	C	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPM6A	2823	genome.wustl.edu	37	4	176561951	176561951	+	Missense_Mutation	SNP	T	T	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GCNT4	51301	genome.wustl.edu	37	5	74325746	74325746	+	Silent	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAT2B	27430	genome.wustl.edu	37	5	162943642	162943642	+	Missense_Mutation	SNP	C	C	G			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PKHD1	5314	genome.wustl.edu	37	6	51637531	51637531	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CPVL	54504	genome.wustl.edu	37	7	29152438	29152438	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCNK9	51305	genome.wustl.edu	37	8	140631178	140631178	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KAT6B	23522	genome.wustl.edu	37	10	76789602	76789602	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692923	89692923	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SBF2	81846	genome.wustl.edu	37	11	9874235	9874235	+	Silent	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANO3	63982	genome.wustl.edu	37	11	26681884	26681884	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR4A15	81328	genome.wustl.edu	37	11	55136133	55136133	+	Missense_Mutation	SNP	G	G	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR10G9	219870	genome.wustl.edu	37	11	123894500	123894500	+	Missense_Mutation	SNP	C	C	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GLB1L3	112937	genome.wustl.edu	37	11	134151937	134151937	+	Silent	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BEST3	144453	genome.wustl.edu	37	12	70070771	70070771	+	Silent	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC729501	729501	genome.wustl.edu	37	13	19043483	19043483	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100128626	100128626	genome.wustl.edu	37	13	64385291	64385291	+	RNA	SNP	C	C	G			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NUSAP1	51203	genome.wustl.edu	37	15	41643209	41643209	+	Missense_Mutation	SNP	A	A	G			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAN2A2	4122	genome.wustl.edu	37	15	91450664	91450664	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ABCA3	21	genome.wustl.edu	37	16	2338188	2338188	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AMDHD2	51005	genome.wustl.edu	37	16	2579481	2579481	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67662338	67662338	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RAP1GAP2	23108	genome.wustl.edu	37	17	2867192	2867192	+	Missense_Mutation	SNP	C	C	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PER1	5187	genome.wustl.edu	37	17	8051032	8051032	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ELAC2	60528	genome.wustl.edu	37	17	12905832	12905832	+	Missense_Mutation	SNP	T	T	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDK5R1	8851	genome.wustl.edu	37	17	30815433	30815433	+	Silent	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPATCH8	23131	genome.wustl.edu	37	17	42541838	42541838	+	Splice_Site	SNP	A	A	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BAHCC1	57597	genome.wustl.edu	37	17	79409985	79409985	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCBE1	147372	genome.wustl.edu	37	18	57136802	57136802	+	Missense_Mutation	SNP	C	C	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC400682	400682	genome.wustl.edu	37	19	21838635	21838635	+	Silent	SNP	T	T	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MLL4	9757	genome.wustl.edu	37	19	36229292	36229292	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PSG11	5680	genome.wustl.edu	37	19	43529182	43529182	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PFDN4	5203	genome.wustl.edu	37	20	52835581	52835581	+	Silent	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BMP7	655	genome.wustl.edu	37	20	55840761	55840761	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TCEAL6	158931	genome.wustl.edu	37	X	101396021	101396021	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAP7D3	79649	genome.wustl.edu	37	X	135301809	135301809	+	Silent	SNP	G	G	C			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR112	139378	genome.wustl.edu	37	X	135426787	135426787	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BCAP31	10134	genome.wustl.edu	37	X	152966426	152966426	+	Missense_Mutation	SNP	G	G	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RNASEL	6041	genome.wustl.edu	37	1	182555014	182555014	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PARP3	10039	genome.wustl.edu	37	3	51979926	51979926	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
B4GALT7	11285	genome.wustl.edu	37	5	177034457	177034457	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC5B	727897	genome.wustl.edu	37	11	1271703	1271703	+	Silent	SNP	C	C	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SNX32	254122	genome.wustl.edu	37	11	65617575	65617575	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GAS6	2621	genome.wustl.edu	37	13	114535848	114535848	+	Missense_Mutation	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF469	84627	genome.wustl.edu	37	16	88494824	88494824	+	Missense_Mutation	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TOX2	84969	genome.wustl.edu	37	20	42679966	42679966	+	Silent	SNP	G	G	A			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC729057	729057	genome.wustl.edu	37	22	16123783	16123783	+	RNA	SNP	C	C	T			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100132805	100132805	genome.wustl.edu	37	3	194353772	194353773	+	Frame_Shift_Ins	INS	-	-	CCGCCCGACAG			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000224872	0	genome.wustl.edu	37	3	195378243	195378243	+	Splice_Site	DEL	T	T	-			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100132972	100132972	genome.wustl.edu	37	17	25679290	25679290	+	RNA	DEL	C	C	-			TCGA-BS-A0V6-01	TCGA-BS-A0V6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
