Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
PTCH2	8643	genome.wustl.edu	37	1	45294893	45294893	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BLZF1	8548	genome.wustl.edu	37	1	169347745	169347745	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLHL29	114818	genome.wustl.edu	37	2	23865406	23865406	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SPRED2	200734	genome.wustl.edu	37	2	65540827	65540827	+	Silent	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INPP4A	3631	genome.wustl.edu	37	2	99193476	99193476	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LIMS2	55679	genome.wustl.edu	37	2	128398556	128398556	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A165-01	TCGA-D1-A165-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TTN	7273	genome.wustl.edu	37	2	179422944	179422944	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A165-01	TCGA-D1-A165-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
USP37	57695	genome.wustl.edu	37	2	219346797	219346797	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
XIRP1	165904	genome.wustl.edu	37	3	39229630	39229630	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTH1R	5745	genome.wustl.edu	37	3	46942522	46942522	+	Silent	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MECOM	2122	genome.wustl.edu	37	3	168834410	168834410	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MECOM	2122	genome.wustl.edu	37	3	168834483	168834483	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AFM	173	genome.wustl.edu	37	4	74354475	74354475	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANP32C	23520	genome.wustl.edu	37	4	165118819	165118819	+	Silent	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HEATR7B2	133558	genome.wustl.edu	37	5	41058234	41058234	+	Silent	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3R1	5295	genome.wustl.edu	37	5	67592109	67592109	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IQGAP2	10788	genome.wustl.edu	37	5	75970370	75970370	+	Silent	SNP	C	C	A			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IMPG1	3617	genome.wustl.edu	37	6	76633351	76633351	+	Silent	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100132308	100132308	genome.wustl.edu	37	7	63020550	63020550	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM60	85025	genome.wustl.edu	37	7	77423488	77423488	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AP4M1	9179	genome.wustl.edu	37	7	99701087	99701087	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRIM35	23087	genome.wustl.edu	37	8	27145187	27145187	+	Silent	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EXTL3	2137	genome.wustl.edu	37	8	28588822	28588822	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A165-01	TCGA-D1-A165-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTSS1	9788	genome.wustl.edu	37	8	125565534	125565534	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM8B	51754	genome.wustl.edu	37	9	35842567	35842567	+	Silent	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C9orf79	286234	genome.wustl.edu	37	9	90500709	90500709	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692850	89692850	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNND1	1500	genome.wustl.edu	37	11	57564458	57564458	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC22A6	9356	genome.wustl.edu	37	11	62748503	62748503	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RNF121	55298	genome.wustl.edu	37	11	71701743	71701743	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A165-01	TCGA-D1-A165-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TYR	7299	genome.wustl.edu	37	11	88911897	88911897	+	Missense_Mutation	SNP	A	A	T			TCGA-D1-A165-01	TCGA-D1-A165-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLCZ1	89869	genome.wustl.edu	37	12	18837147	18837147	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SCN8A	6334	genome.wustl.edu	37	12	52200163	52200163	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DRAM1	55332	genome.wustl.edu	37	12	102302063	102302063	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A165-01	TCGA-D1-A165-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR133	283383	genome.wustl.edu	37	12	131498854	131498854	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHF2P1	266695	genome.wustl.edu	37	13	19626669	19626669	+	RNA	SNP	G	G	T			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NYNRIN	57523	genome.wustl.edu	37	14	24885812	24885812	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACTN1	87	genome.wustl.edu	37	14	69346747	69346747	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BMF	90427	genome.wustl.edu	37	15	40398146	40398146	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRAP1	10131	genome.wustl.edu	37	16	3721754	3721754	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMG1	23049	genome.wustl.edu	37	16	18859335	18859335	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A165-01	TCGA-D1-A165-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATXN2L	11273	genome.wustl.edu	37	16	28846890	28846890	+	Silent	SNP	A	A	C			TCGA-D1-A165-01	TCGA-D1-A165-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC16A5	9121	genome.wustl.edu	37	17	73096653	73096653	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRAM1	84106	genome.wustl.edu	37	19	8555632	8555632	+	Silent	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FDX1L	112812	genome.wustl.edu	37	19	10421272	10421272	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF490	57474	genome.wustl.edu	37	19	12691749	12691749	+	Silent	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CALM3	808	genome.wustl.edu	37	19	47111527	47111527	+	Silent	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARHGAP35	2909	genome.wustl.edu	37	19	47421960	47421960	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF766	90321	genome.wustl.edu	37	19	52794321	52794321	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A165-01	TCGA-D1-A165-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FRMPD4	9758	genome.wustl.edu	37	X	12736731	12736731	+	Silent	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CLCN5	1184	genome.wustl.edu	37	X	49854898	49854898	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHKA1	5255	genome.wustl.edu	37	X	71840622	71840622	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHM	1121	genome.wustl.edu	37	X	85128070	85128070	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A165-01	TCGA-D1-A165-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTPN14	5784	genome.wustl.edu	37	1	214557868	214557868	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SIPA1L2	57568	genome.wustl.edu	37	1	232619629	232619629	+	Silent	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INPP4A	3631	genome.wustl.edu	37	2	99155399	99155399	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYL1	4632	genome.wustl.edu	37	2	211179707	211179707	+	Silent	SNP	C	C	A			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A165-01	TCGA-D1-A165-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA0947	23379	genome.wustl.edu	37	5	5476115	5476115	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100288656	100288656	genome.wustl.edu	37	5	177433943	177433943	+	RNA	SNP	T	T	C			TCGA-D1-A165-01	TCGA-D1-A165-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C7orf43	55262	genome.wustl.edu	37	7	99753382	99753382	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DBC1	1620	genome.wustl.edu	37	9	121929366	121929366	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDH15	65217	genome.wustl.edu	37	10	55582088	55582088	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A165-01	TCGA-D1-A165-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF461	92283	genome.wustl.edu	37	19	37129666	37129666	+	Silent	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LILRB1	10859	genome.wustl.edu	37	19	55143599	55143599	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TBL1X	6907	genome.wustl.edu	37	X	9683031	9683031	+	Silent	SNP	G	G	A			TCGA-D1-A165-01	TCGA-D1-A165-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INPP4A	3631	genome.wustl.edu	37	2	99185132	99185133	+	Splice_Site	INS	-	-	T			TCGA-D1-A165-01	TCGA-D1-A165-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FZD5	7855	genome.wustl.edu	37	2	208632937	208632938	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-D1-A165-01	TCGA-D1-A165-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3R1	5295	genome.wustl.edu	37	5	67591276	67591278	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-D1-A165-01	TCGA-D1-A165-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89717757	89717758	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-D1-A165-01	TCGA-D1-A165-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000251645	0	genome.wustl.edu	37	12	122513633	122513634	+	RNA	DEL	TG	TG	-			TCGA-D1-A165-01	TCGA-D1-A165-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RBBP6	5930	genome.wustl.edu	37	16	24573186	24573188	+	In_Frame_Del	DEL	ACT	ACT	-			TCGA-D1-A165-01	TCGA-D1-A165-01	ACT	ACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
