Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
NBPF1	55672	genome.wustl.edu	37	1	16891365	16891365	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EPHB2	2048	genome.wustl.edu	37	1	23110965	23110965	+	Silent	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RNPC3	55599	genome.wustl.edu	37	1	104078803	104078803	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFNA4	1945	genome.wustl.edu	37	1	155041445	155041445	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP27C1	339761	genome.wustl.edu	37	2	127957048	127957048	+	Silent	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
XIRP2	129446	genome.wustl.edu	37	2	168110547	168110547	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBXW7	55294	genome.wustl.edu	37	4	153250883	153250883	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC642590	642590	genome.wustl.edu	37	6	71318006	71318006	+	RNA	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZDHHC14	79683	genome.wustl.edu	37	6	158066798	158066798	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
INTS1	26173	genome.wustl.edu	37	7	1510261	1510261	+	Silent	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRKAG2	51422	genome.wustl.edu	37	7	151483613	151483613	+	Silent	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LSP1	4046	genome.wustl.edu	37	11	1874398	1874398	+	Silent	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KDM2A	22992	genome.wustl.edu	37	11	66985227	66985227	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHD4	1108	genome.wustl.edu	37	12	6697096	6697096	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SRRM4	84530	genome.wustl.edu	37	12	119588923	119588923	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C12orf65	91574	genome.wustl.edu	37	12	123741495	123741495	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FBLN5	10516	genome.wustl.edu	37	14	92403397	92403397	+	Silent	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TP53	7157	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NPEPPS	9520	genome.wustl.edu	37	17	45691041	45691041	+	Silent	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF56	7608	genome.wustl.edu	37	19	19946605	19946605	+	Silent	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LIG1	3978	genome.wustl.edu	37	19	48626232	48626232	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LIG1	3978	genome.wustl.edu	37	19	48653466	48653466	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A16G-01	TCGA-D1-A16G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SALL4	57167	genome.wustl.edu	37	20	50405676	50405676	+	Silent	SNP	C	C	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198804	0	genome.wustl.edu	37	MT	7216	7216	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MT-CYB	0	genome.wustl.edu	37	MT	15623	15623	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DMD	1756	genome.wustl.edu	37	X	31196794	31196794	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNA1F	778	genome.wustl.edu	37	X	49075803	49075803	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CDX4	1046	genome.wustl.edu	37	X	72667325	72667325	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DACH2	117154	genome.wustl.edu	37	X	85969556	85969556	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COL4A5	1287	genome.wustl.edu	37	X	107826158	107826158	+	Silent	SNP	T	T	C			TCGA-D1-A16G-01	TCGA-D1-A16G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PLXNB1	5364	genome.wustl.edu	37	3	48452292	48452292	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LPA	4018	genome.wustl.edu	37	6	161027548	161027548	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16G-01	TCGA-D1-A16G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POLR2J4	84820	genome.wustl.edu	37	7	43982674	43982674	+	RNA	SNP	A	A	G			TCGA-D1-A16G-01	TCGA-D1-A16G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MUC12	10071	genome.wustl.edu	37	7	100646182	100646182	+	Nonsense_Mutation	SNP	C	C	G			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNA1B	774	genome.wustl.edu	37	9	140777292	140777292	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SOX5	6660	genome.wustl.edu	37	12	23818392	23818392	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16G-01	TCGA-D1-A16G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CCDC144A	9720	genome.wustl.edu	37	17	16631011	16631011	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000246156	0	genome.wustl.edu	37	19	46895570	46895570	+	RNA	SNP	C	C	T			TCGA-D1-A16G-01	TCGA-D1-A16G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CELSR1	9620	genome.wustl.edu	37	22	46860088	46860088	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198938	0	genome.wustl.edu	37	MT	9715	9715	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NXF2	56001	genome.wustl.edu	37	X	101572395	101572395	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MST1P9	11223	genome.wustl.edu	37	1	17082264	17082264	+	RNA	DEL	G	G	-			TCGA-D1-A16G-01	TCGA-D1-A16G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100293190	100293190	genome.wustl.edu	37	7	223044	223045	+	RNA	INS	-	-	AT			TCGA-D1-A16G-01	TCGA-D1-A16G-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000230445	0	genome.wustl.edu	37	10	27536701	27536704	+	Splice_Site	DEL	TAGA	TAGA	-			TCGA-D1-A16G-01	TCGA-D1-A16G-01	TAGA	TAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
