Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARID1A	8289	genome.wustl.edu	37	1	27100195	27100195	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC9A11	284525	genome.wustl.edu	37	1	173569254	173569254	+	Splice_Site	SNP	A	A	G			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
QSOX1	5768	genome.wustl.edu	37	1	180159578	180159578	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TMEM131	23505	genome.wustl.edu	37	2	98431767	98431767	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LRRFIP2	9209	genome.wustl.edu	37	3	37107760	37107760	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IGSF10	285313	genome.wustl.edu	37	3	151165992	151165992	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DDIT4L	115265	genome.wustl.edu	37	4	101111093	101111093	+	Silent	SNP	T	T	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAT4	79633	genome.wustl.edu	37	4	126239981	126239981	+	Silent	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HHLA1	10086	genome.wustl.edu	37	8	133099921	133099921	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PARD3	56288	genome.wustl.edu	37	10	34671762	34671762	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692980	89692980	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYOF	26509	genome.wustl.edu	37	10	95162075	95162075	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000189332	0	genome.wustl.edu	37	11	18231374	18231374	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR5AS1	219447	genome.wustl.edu	37	11	55798258	55798258	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CD4	920	genome.wustl.edu	37	12	6925366	6925366	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR10P1	121130	genome.wustl.edu	37	12	56030803	56030803	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C14orf162	56936	genome.wustl.edu	37	14	70037868	70037868	+	RNA	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FLVCR2	55640	genome.wustl.edu	37	14	76091024	76091024	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BEGAIN	57596	genome.wustl.edu	37	14	101011384	101011384	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTCF	10664	genome.wustl.edu	37	16	67655479	67655479	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYO15A	51168	genome.wustl.edu	37	17	18035775	18035775	+	Silent	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FARSA	2193	genome.wustl.edu	37	19	13039242	13039242	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NFIX	4784	genome.wustl.edu	37	19	13192667	13192667	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LILRP2	79166	genome.wustl.edu	37	19	55220640	55220640	+	RNA	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FOXA2	3170	genome.wustl.edu	37	20	22563374	22563374	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KIAA0889	140710	genome.wustl.edu	37	20	35444182	35444182	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC91316	91316	genome.wustl.edu	37	22	23980718	23980718	+	RNA	SNP	C	C	T			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GAL3ST1	9514	genome.wustl.edu	37	22	30951447	30951447	+	Silent	SNP	G	G	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MORC4	79710	genome.wustl.edu	37	X	106199721	106199721	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
UBE2NL	389898	genome.wustl.edu	37	X	142967347	142967347	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000240967	0	genome.wustl.edu	37	5	99382141	99382141	+	RNA	SNP	G	G	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
COG6	57511	genome.wustl.edu	37	13	40325365	40325365	+	RNA	DEL	T	T	-			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ADAM11	4185	genome.wustl.edu	37	17	42851730	42851734	+	Frame_Shift_Del	DEL	GGCGG	GGCGG	-			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	GGCGG	GGCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PPP4R1	9989	genome.wustl.edu	37	18	9550056	9550057	+	Frame_Shift_Ins	INS	-	-	AC			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AKAP4	8852	genome.wustl.edu	37	X	49959089	49959090	+	Splice_Site	INS	-	-	A			TCGA-D1-A16Q-01	TCGA-D1-A16Q-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
