Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
RPL31P11	641311	genome.wustl.edu	37	1	161654618	161654618	+	RNA	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CACNA1E	777	genome.wustl.edu	37	1	181689471	181689471	+	Silent	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CHI3L1	1116	genome.wustl.edu	37	1	203148685	203148685	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ACVR1	90	genome.wustl.edu	37	2	158622506	158622506	+	Silent	SNP	G	G	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCNH7	90134	genome.wustl.edu	37	2	163302758	163302758	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KCNH7	90134	genome.wustl.edu	37	2	163693047	163693047	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC19A3	80704	genome.wustl.edu	37	2	228563476	228563476	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41266107	41266107	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CTNNB1	1499	genome.wustl.edu	37	3	41277903	41277903	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C3orf77	375337	genome.wustl.edu	37	3	44284816	44284816	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SETD2	29072	genome.wustl.edu	37	3	47108598	47108598	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GMPPB	29925	genome.wustl.edu	37	3	49759299	49759299	+	Silent	SNP	C	C	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZIC4	84107	genome.wustl.edu	37	3	147113700	147113700	+	Silent	SNP	C	C	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178947827	178947827	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SEC24B	10427	genome.wustl.edu	37	4	110415815	110415815	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DCHS2	54798	genome.wustl.edu	37	4	155226342	155226342	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHA2	56146	genome.wustl.edu	37	5	140175497	140175497	+	Silent	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TRA2A	29896	genome.wustl.edu	37	7	23552631	23552631	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FANCG	2189	genome.wustl.edu	37	9	35076819	35076819	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100287354	100287354	genome.wustl.edu	37	9	68455095	68455095	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SLC28A3	64078	genome.wustl.edu	37	9	86920237	86920237	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HIF1AN	55662	genome.wustl.edu	37	10	102296244	102296244	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16R-01	TCGA-D1-A16R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAT3	120114	genome.wustl.edu	37	11	92533857	92533857	+	Silent	SNP	C	C	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KLRK1	22914	genome.wustl.edu	37	12	10532351	10532351	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RXFP2	122042	genome.wustl.edu	37	13	32365986	32365986	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ANKRD11	29123	genome.wustl.edu	37	16	89355035	89355035	+	Silent	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CRK	1398	genome.wustl.edu	37	17	1340005	1340005	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NLRP1	22861	genome.wustl.edu	37	17	5462617	5462617	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16R-01	TCGA-D1-A16R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ST8SIA3	51046	genome.wustl.edu	37	18	55024422	55024422	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARID3A	1820	genome.wustl.edu	37	19	960103	960103	+	Silent	SNP	C	C	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NOTCH3	4854	genome.wustl.edu	37	19	15303203	15303203	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100287226	100287226	genome.wustl.edu	37	19	22499899	22499899	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CYP2S1	29785	genome.wustl.edu	37	19	41704752	41704752	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DEFB129	140881	genome.wustl.edu	37	20	210318	210318	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MYH9	4627	genome.wustl.edu	37	22	36680169	36680169	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TUBGCP6	85378	genome.wustl.edu	37	22	50659328	50659328	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16R-01	TCGA-D1-A16R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMARCA1	6594	genome.wustl.edu	37	X	128649876	128649876	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RGL1	23179	genome.wustl.edu	37	1	183853981	183853981	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LAX1	54900	genome.wustl.edu	37	1	203734697	203734697	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
AURKAPS1	6791	genome.wustl.edu	37	1	220440979	220440979	+	RNA	SNP	T	T	C			TCGA-D1-A16R-01	TCGA-D1-A16R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EDIL3	10085	genome.wustl.edu	37	5	83549931	83549931	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HMGCLL1	54511	genome.wustl.edu	37	6	55378995	55378995	+	Splice_Site	SNP	C	C	G			TCGA-D1-A16R-01	TCGA-D1-A16R-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000209082	0	genome.wustl.edu	37	MT	3281	3281	+	RNA	SNP	G	G	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89692886	89692886	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16R-01	TCGA-D1-A16R-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PBX3	5090	genome.wustl.edu	37	9	128728395	128728396	+	RNA	INS	-	-	A			TCGA-D1-A16R-01	TCGA-D1-A16R-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
CECR7	100130418	genome.wustl.edu	37	22	17538354	17538355	+	RNA	INS	-	-	C			TCGA-D1-A16R-01	TCGA-D1-A16R-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
