Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
CCDC27	148870	genome.wustl.edu	37	1	3679776	3679776	+	Silent	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PRAMEF2	65122	genome.wustl.edu	37	1	12921197	12921197	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IL6R	3570	genome.wustl.edu	37	1	154401792	154401792	+	Missense_Mutation	SNP	C	C	G			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C1orf110	339512	genome.wustl.edu	37	1	162825515	162825515	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16V-01	TCGA-D1-A16V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C4BPA	722	genome.wustl.edu	37	1	207307754	207307754	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HHIPL2	79802	genome.wustl.edu	37	1	222696175	222696175	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
NRXN1	9378	genome.wustl.edu	37	2	50733679	50733679	+	Silent	SNP	A	A	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FN1	2335	genome.wustl.edu	37	2	216256412	216256412	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
IFT80	57560	genome.wustl.edu	37	3	159995151	159995151	+	Missense_Mutation	SNP	T	T	G			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ARPM1	84517	genome.wustl.edu	37	3	169487261	169487261	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RFESD	317671	genome.wustl.edu	37	5	94991918	94991918	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TSLP	85480	genome.wustl.edu	37	5	110411719	110411719	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGB3	56102	genome.wustl.edu	37	5	140751830	140751830	+	Silent	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PCDHGB5	56101	genome.wustl.edu	37	5	140777830	140777830	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GRPEL2	134266	genome.wustl.edu	37	5	148727844	148727844	+	Silent	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EYA4	2070	genome.wustl.edu	37	6	133783524	133783524	+	Nonsense_Mutation	SNP	T	T	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TM7SF4	81501	genome.wustl.edu	37	8	105361447	105361447	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
HAUS6	54801	genome.wustl.edu	37	9	19082885	19082885	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
FAM75D5	347127	genome.wustl.edu	37	9	84532368	84532368	+	RNA	SNP	G	G	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHF2	5253	genome.wustl.edu	37	9	96415561	96415561	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16V-01	TCGA-D1-A16V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GPR158	57512	genome.wustl.edu	37	10	25861792	25861792	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89653806	89653806	+	Missense_Mutation	SNP	T	T	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PTEN	5728	genome.wustl.edu	37	10	89711900	89711900	+	Missense_Mutation	SNP	G	G	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TCF7L2	6934	genome.wustl.edu	37	10	114925435	114925435	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OR4C13	283092	genome.wustl.edu	37	11	49974785	49974785	+	Missense_Mutation	SNP	G	G	C			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000166007	0	genome.wustl.edu	37	11	55065469	55065469	+	Missense_Mutation	SNP	A	A	G			TCGA-D1-A16V-01	TCGA-D1-A16V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ATM	472	genome.wustl.edu	37	11	108198487	108198487	+	Splice_Site	SNP	T	T	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MFRP	83552	genome.wustl.edu	37	11	119216262	119216262	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C1S	716	genome.wustl.edu	37	12	7169154	7169154	+	Silent	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DENND5B	160518	genome.wustl.edu	37	12	31555475	31555475	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZFYVE26	23503	genome.wustl.edu	37	14	68282677	68282677	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MAGEL2	54551	genome.wustl.edu	37	15	23890265	23890265	+	Silent	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMG1	23049	genome.wustl.edu	37	16	18827786	18827786	+	Silent	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EXOC3L1	283849	genome.wustl.edu	37	16	67221528	67221528	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
GGT6	124975	genome.wustl.edu	37	17	4462716	4462716	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
DRG2	1819	genome.wustl.edu	37	17	18007987	18007987	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
SMARCE1	6605	genome.wustl.edu	37	17	38792213	38792213	+	Missense_Mutation	SNP	T	T	C			TCGA-D1-A16V-01	TCGA-D1-A16V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
KRTAP9-7	100505724	genome.wustl.edu	37	17	39432371	39432371	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
OTOP2	92736	genome.wustl.edu	37	17	72927021	72927021	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF69	7620	genome.wustl.edu	37	19	12016446	12016446	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
C19orf43	79002	genome.wustl.edu	37	19	12841822	12841822	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PDYN	5173	genome.wustl.edu	37	20	1961316	1961316	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
EFCAB8	388795	genome.wustl.edu	37	20	31549104	31549104	+	Missense_Mutation	SNP	C	C	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PHACTR3	116154	genome.wustl.edu	37	20	58349361	58349361	+	Silent	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000198695	0	genome.wustl.edu	37	MT	14607	14607	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
BMX	660	genome.wustl.edu	37	X	15526562	15526562	+	Missense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
MTRR	4552	genome.wustl.edu	37	5	7873554	7873554	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
TNS3	64759	genome.wustl.edu	37	7	47451396	47451396	+	Missense_Mutation	SNP	C	C	T			TCGA-D1-A16V-01	TCGA-D1-A16V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
POM121	9883	genome.wustl.edu	37	7	72413667	72413667	+	Silent	SNP	G	G	C			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ASB16	92591	genome.wustl.edu	37	17	42248231	42248231	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D1-A16V-01	TCGA-D1-A16V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
PIK3R1	5295	genome.wustl.edu	37	5	67588143	67588144	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-D1-A16V-01	TCGA-D1-A16V-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
LOC100132354	100132354	genome.wustl.edu	37	6	43858933	43858934	+	RNA	INS	-	-	TC			TCGA-D1-A16V-01	TCGA-D1-A16V-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
RB1	5925	genome.wustl.edu	37	13	49027156	49027159	+	Frame_Shift_Del	DEL	CAAT	CAAT	-			TCGA-D1-A16V-01	TCGA-D1-A16V-01	CAAT	CAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000235048	0	genome.wustl.edu	37	15	29008642	29008662	+	In_Frame_Del	DEL	CCCCTCCATGGATCACCGGCA	CCCCTCCATGGATCACCGGCA	-			TCGA-D1-A16V-01	TCGA-D1-A16V-01	CCCCTCCATGGATCACCGGCA	CCCCTCCATGGATCACCGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ENSG00000248124	0	genome.wustl.edu	37	16	21831680	21831680	+	RNA	DEL	A	A	-			TCGA-D1-A16V-01	TCGA-D1-A16V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
ZNF223	7766	genome.wustl.edu	37	19	44571307	44571308	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-D1-A16V-01	TCGA-D1-A16V-01	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx
