| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/BRCA/1216837/0.GDAC_clinicalDataMerger.Finished/BRCA.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga/reference/clinical/2012_05_14/stage3_params_clin_brca.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | BRCA |
| Execution Times: | |
| Submitted: | 11:03:30 14-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 02 mins 02 secs |
step 1. GDAC_clinicalDataPicker [id: 90660] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/BRCA/1216837/0.GDAC_clinicalDataMerger.Finished/BRCA.clin.merged.txt |
| selectFile | file:/xchip/cga/reference/clinical/2012_05_14/stage3_params_clin_brca.tsv |
| nodeColumn | 1 |
| outPrefix | BRCA |
| Output Files: | |
| BRCA.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 11:03:33 14-05-12 |
| Completed: | 11:04:19 14-05-12 |
| Elapsed: | 00 hrs 00 mins 45 secs |
step 2. GDAC_clinicalDataPickerReport [id: 90661] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:44
| picked | BRCA.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 11:03:33 14-05-12 |
| Completed: | 11:05:30 14-05-12 |
| Elapsed: | 00 hrs 01 mins 56 secs |