| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_04_25__00_01_01.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues1355122795372144748.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues632551608778807361.tsv |
| GDAC_MergeDataFiles2 output filename | BRCA |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data |
| Execution Times: | |
| Submitted: | 18:59:58 09-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 00 mins 39 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 87335] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:8
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_04_25__00_01_01.samplestamp.txt |
| annotationid | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data |
| sdrffilename | |
| datapathsfile | dependentsValues1355122795372144748.tsv |
| Output Files: | |
| dcc_archive.properties | |
| BRCA.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.sdrf.txt | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 18:59:58 09-05-12 |
| Completed: | 19:00:11 09-05-12 |
| Elapsed: | 00 hrs 00 mins 12 secs |
step 2. GDAC_MergeDataFiles [id: 87336] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues632551608778807361.tsv |
| output filename | BRCA |
| row_column | column |
| num_headers | 1 |
| filetype | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data |
| Output Files: | |
| BRCA.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 18:59:58 09-05-12 |
| Completed: | 19:00:37 09-05-12 |
| Elapsed: | 00 hrs 00 mins 38 secs |