| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_04_25__00_01_01.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues6287191723226991531.tsv |
| GDAC_DataMerger2 output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| GDAC_DataMerger2 dataPaths | dependentsValues2718915124408339490.tsv |
| Execution Times: | |
| Submitted: | 23:35:58 11-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 00 mins 58 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 90138] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:8
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_04_25__00_01_01.samplestamp.txt |
| annotationid | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| sdrffilename | |
| datapathsfile | dependentsValues6287191723226991531.tsv |
| Output Files: | |
| dcc_archive.properties | |
| BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.sdrf.txt | |
| .lsf.out | |
| dcc_archive_manifest.tsv | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:35:58 11-05-12 |
| Completed: | 23:36:18 11-05-12 |
| Elapsed: | 00 hrs 00 mins 19 secs |
step 2. GDAC_DataMerger [id: 90139] Merge a list of files into a single file. Validate that all the files have the same columns and row names.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00481:4
| output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| dataPaths | dependentsValues2718915124408339490.tsv |
| Output Files: | |
| .lsf.out | |
| BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt | |
| Execution Times: | |
| Submitted: | 23:35:58 11-05-12 |
| Completed: | 23:36:56 11-05-12 |
| Elapsed: | 00 hrs 00 mins 57 secs |