Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANKRD34C	390616	genome.wustl.edu	37	15	79586096	79586096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79586096	79586096	C	T	SNP	ANKRD34C	XM_002343327	human	genbank	57_37b	+1	model	missense	c.470	p.S157L	0.998	NULL	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	-	no_errors	
ASXL1	171023	genome.wustl.edu	37	20	31021535	31021535	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31021535	31021535	C	T	SNP	ASXL1	NM_015338	human	genbank	57_37b	+1	reviewed	nonsense	c.1534	p.Q512*	1.000	NULL	NULL	-	no_errors	
C14orf115	55237	genome.wustl.edu	37	14	74824516	74824516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74824516	74824516	C	T	SNP	C14orf115	NM_018228	human	genbank	57_37b	+1	validated	missense	c.1030	p.R344C	0.989	NULL	HMMPfam_Transposase_8	-	no_errors	
C16orf11	146325	genome.wustl.edu	37	16	614821	614821	+	Silent	SNP	A	G	G	rs1010761	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	614821	614821	A	G	SNP	C16orf11	NM_145270	human	genbank	57_37b	+1	predicted	silent	c.1230	p.R410	0.787	NULL	NULL	-		
C2orf67	151050	genome.wustl.edu	37	2	211018779	211018779	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	211018779	211018779	C	T	SNP	C2orf67	NM_152519	human	genbank	57_37b	-1	validated	silent	c.528	p.E176	1.000	NULL	NULL	-	no_errors	
C3orf75	54859	genome.wustl.edu	37	3	47555027	47555027	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47555027	47555027	C	A	SNP	C3orf75	NM_001031703	human	genbank	57_37b	-1	validated	missense	c.54	p.Q18H	1.000	HMMPfam_DUF2348	HMMPfam_DUF2348	-	no_errors	
C9orf79	286234	genome.wustl.edu	37	9	90503007	90503007	+	Missense_Mutation	SNP	A	A	G	rs11789780	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90503007	90503007	A	G	SNP	C9orf79	NM_178828	human	genbank	57_37b	+1	validated	missense	c.3605	p.D1202G	0.003	NULL	NULL	-		
CD247	919	genome.wustl.edu	37	1	167404179	167404179	+	Silent	SNP	G	G	A	rs61806155	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167404179	167404179	G	A	SNP	CD247	ENST00000367860	human	ensembl	57_37b	-1	known	silent	c.789	p.L263	0.270	NULL	HMMPfam_ITAM,HMMSmart_SM00077	-		
CD55	1604	genome.wustl.edu	37	1	207498015	207498015	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207498015	207498015	A	-	DEL	CD55	NM_001114752	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.398	p.Y133fs	0.338	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	(deletion:cds_exon[207497904,207498095])	no_errors	
CHN2	1124	genome.wustl.edu	37	7	29535591	29535591	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	29535591	29535591	C	A	SNP	CHN2	NM_004067	human	genbank	57_37b	+1	reviewed	missense	c.678	p.H226Q	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
COL6A6	131873	genome.wustl.edu	37	3	130292858	130292858	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130292858	130292858	G	T	SNP	COL6A6	NM_001102608	human	genbank	57_37b	+1	provisional	missense	c.3036	p.Q1012H	0.000	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
DHX32	55760	genome.wustl.edu	37	10	127527669	127527669	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	127527669	127527669	A	G	SNP	DHX32	NM_018180	human	genbank	57_37b	-1	reviewed	silent	c.1782	p.I594	0.270	HMMPfam_DUF1605	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors	
EML5	161436	genome.wustl.edu	37	14	89172755	89172755	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	89172755	89172755	T	A	SNP	EML5	NM_183387	human	genbank	57_37b	-1	validated	missense	c.1673	p.K558I	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors	
ENSG00000236023	0	genome.wustl.edu	37	11	49104090	49104090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	49104090	49104090	C	T	SNP	ENSG00000236023	ENST00000450694	human	ensembl	57_37b	+1	known	missense	c.623	p.T208M	0.001	superfamily_HMG-box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors	
ENSG00000244905	0	genome.wustl.edu	37	18	12785900	12785900	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12785900	12785900	G	A	SNP	ENSG00000244905	ENST00000501187	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.006	-	-	-	no_errors	
FAM13A	10144	genome.wustl.edu	37	4	89649699	89649699	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	89649699	89649699	A	G	SNP	FAM13A	NM_014883	human	genbank	57_37b	-1	validated	silent	c.3057	p.D1019	0.247	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
GDPD1	284161	genome.wustl.edu	37	17	57334498	57334498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57334498	57334498	G	A	SNP	GDPD1	NM_182569	human	genbank	57_37b	+1	validated	missense	c.383	p.G128E	1.000	superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD	superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD	-	no_errors	
KIF16B	55614	genome.wustl.edu	37	20	16474996	16474996	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	16474996	16474996	C	A	SNP	KIF16B	NM_024704	human	genbank	57_37b	-1	validated	splice_site	c.1243-1	e12-1	1.000	-	-	-	no_errors	
KIRREL3	84623	genome.wustl.edu	37	11	126294697	126294697	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	126294697	126294697	C	T	SNP	KIRREL3	NM_032531	human	genbank	57_37b	-1	reviewed	silent	c.2115	p.E705	1.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set	-	no_errors	
LAMA1	284217	genome.wustl.edu	37	18	7046346	7046346	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	7046346	7046346	G	A	SNP	LAMA1	NM_005559	human	genbank	57_37b	-1	validated	silent	c.789	p.D263	1.000	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LOC100132707	0	genome.wustl.edu	37	7	154736077	154736077	+	RNA	SNP	G	G	A	rs930437	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	154736077	154736077	G	A	SNP	LOC100132707	NR_024476	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
MAGEE2	139599	genome.wustl.edu	37	X	75004120	75004120	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	75004120	75004120	C	G	SNP	MAGEE2	NM_138703	human	genbank	57_37b	-1	validated	missense	c.767	p.R256T	0.053	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56168534	56168534	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56168534	56168534	C	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.1490	p.S497fs	1.000	superfamily_SSF57850	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56168468,56168549])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56181812	56181814	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56181812	56181814	GTT	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	in_frame_del	c.4036_4038	p.V1346in_frame_del	0.983:1.000:0.998	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	(deletion:cds_exon[56181759,56181890])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56183211	56183211	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56183211	56183211	A	G	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	missense	c.4121	p.N1374S	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56184105	56184105	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56184105	56184105	G	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	missense	c.4310	p.C1437F	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9088087	9088087	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9088087	9088087	G	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.3728	p.P1243H	0.001	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MYO3A	53904	genome.wustl.edu	37	10	26409687	26409687	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	26409687	26409687	A	G	SNP	MYO3A	NM_017433	human	genbank	57_37b	+1	reviewed	missense	c.1859	p.Q620R	1.000	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ	-	no_errors	
MYO5B	4645	genome.wustl.edu	37	18	47402068	47402068	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47402068	47402068	T	G	SNP	MYO5B	NM_001080467	human	genbank	57_37b	-1	reviewed	missense	c.3526	p.K1176Q	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors	
NKPD1	284353	genome.wustl.edu	37	19	45655333	45655333	+	Missense_Mutation	SNP	T	T	C	rs28469095	byCluster;by1000genomes	TCGA-A2-A04N-01	TCGA-A2-A04N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45655333	45655333	T	C	SNP	NKPD1	NM_198478	human	genbank	57_37b	-1	inferred	missense	c.1696	p.R566G	0.000	NULL	HMMPfam_KAP_NTPase	-		
OR10H1	26539	genome.wustl.edu	37	19	15918231	15918231	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15918231	15918231	G	A	SNP	OR10H1	NM_013940	human	genbank	57_37b	-1	validated	missense	c.617	p.T206M	0.006	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
OR1J4	26219	genome.wustl.edu	37	9	125281810	125281810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125281810	125281810	C	T	SNP	OR1J4	NM_001004452	human	genbank	57_37b	+1	provisional	missense	c.391	p.R131C	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4L1	122742	genome.wustl.edu	37	14	20528495	20528495	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20528495	20528495	G	A	SNP	OR4L1	NM_001004717	human	genbank	57_37b	+1	provisional	missense	c.292	p.V98M	0.968	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCNT	5116	genome.wustl.edu	37	21	47821574	47821574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47821574	47821574	C	T	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	missense	c.4901	p.P1634L	0.000	NULL	HMMPfam_PACT_coil_coil	-	no_errors	
PIK3C3	5289	genome.wustl.edu	37	18	39613908	39613908	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	39613908	39613908	C	A	SNP	PIK3C3	NM_002647	human	genbank	57_37b	+1	validated	missense	c.1826	p.A609D	1.000	superfamily_Kinase_like	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRKAG3	53632	genome.wustl.edu	37	2	219688550	219688550	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219688550	219688550	A	G	SNP	PRKAG3	NM_017431	human	genbank	57_37b	-1	reviewed	missense	c.1405	p.S469P	1.000	HMMPfam_CBS,superfamily_CBS-domain,HMMSmart_SM00116	superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors	
RAD9A	5883	genome.wustl.edu	37	11	67161199	67161199	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67161199	67161199	T	A	SNP	RAD9A	NM_004584	human	genbank	57_37b	+1	reviewed	nonsense	c.387	p.C129*	0.995	HMMPfam_Rad9	superfamily_DNA clamp,HMMPfam_Rad9	-	no_errors	
REG1B	5968	genome.wustl.edu	37	2	79314722	79314722	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	79314722	79314722	G	A	SNP	REG1B	NM_006507	human	genbank	57_37b	-1	reviewed	missense	c.17	p.S6L	0.000	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
RNFT2	84900	genome.wustl.edu	37	12	117178862	117178862	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	117178862	117178862	C	T	SNP	RNFT2	NM_001109903	human	genbank	57_37b	+1	validated	missense	c.46	p.R16C	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
SCLT1	132320	genome.wustl.edu	37	4	129886386	129886386	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	129886386	129886386	T	A	SNP	SCLT1	NM_144643	human	genbank	57_37b	-1	validated	missense	c.865	p.I289L	0.993	NULL	NULL	-	no_errors	
SCN2A	6326	genome.wustl.edu	37	2	166201098	166201098	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166201098	166201098	A	C	SNP	SCN2A	NM_001040142	human	genbank	57_37b	+1	reviewed	missense	c.2596	p.T866P	0.998	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
TCF12	6938	genome.wustl.edu	37	15	57554331	57554331	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	57554331	57554331	A	C	SNP	TCF12	NM_207036	human	genbank	57_37b	+1	reviewed	missense	c.1507	p.N503H	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
TSNARE1	203062	genome.wustl.edu	37	8	143356158	143356158	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143356158	143356158	C	T	SNP	TSNARE1	NM_145003	human	genbank	57_37b	-1	validated	missense	c.1430	p.G477E	0.984	HMMSmart_t_SNARE,HMMPfam_SNARE	superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179640414	179640414	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179640414	179640414	G	T	SNP	TTN	NM_133379	human	genbank	57_37b	-1	reviewed	silent	c.6177	p.I2059	1.000	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors	
UNC45B	146862	genome.wustl.edu	37	17	33496946	33496946	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33496946	33496946	C	T	SNP	UNC45B	NM_173167	human	genbank	57_37b	+1	validated	missense	c.1543	p.R515C	1.000	superfamily_ARM repeat	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_ARM repeat,HMMSmart_SM00185	-	no_errors	
WRN	7486	genome.wustl.edu	37	8	30945377	30945379	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	30945377	30945379	AAG	-	DEL	WRN	NM_000553	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1517_1519	p.E510in_frame_del	0.904:0.908:0.988	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00474,HMMPfam_3_5_exonuc,superfamily_Ribonuclease H-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_RQC,HMMSmart_SM00341,HMMPfam_HRDC	(deletion:cds_exon[30945292,30945436])	no_errors	
ZNF461	92283	genome.wustl.edu	37	19	37129666	37129666	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37129666	37129666	G	A	SNP	ZNF461	NM_153257	human	genbank	57_37b	-1	validated	silent	c.1581	p.C527	0.133	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
ZNF791	163049	genome.wustl.edu	37	19	12734520	12734520	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12734520	12734520	G	T	SNP	ZNF791	NM_153358	human	genbank	57_37b	+1	validated	missense	c.10	p.V4L	0.887	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN12	9753	genome.wustl.edu	37	6	28365880	28365880	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04N-01	TCGA-A2-A04N-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28365880	28365880	C	G	SNP	ZSCAN12	ENST00000361028	human	ensembl	57_37b	-1	known	missense	c.303	p.E101D	1.000	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
