Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB1	5243	genome.wustl.edu	37	7	87145943	87145943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87145943	87145943	C	T	SNP	ABCB1	NM_000927	human	genbank	57_37b	-1	reviewed	missense	c.2966	p.G989E	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCC12	94160	genome.wustl.edu	37	16	48172233	48172233	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	48172233	48172233	T	C	SNP	ABCC12	NM_033226	human	genbank	57_37b	-1	reviewed	silent	c.885	p.T295	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADAMTS5	11096	genome.wustl.edu	37	21	28315764	28315764	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28315764	28315764	T	A	SNP	ADAMTS5	NM_007038	human	genbank	57_37b	-1	reviewed	missense	c.1340	p.D447V	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
ATP2B2	491	genome.wustl.edu	37	3	10417218	10417221	+	Frame_Shift_Del	DEL	GCAC	GCAC	-	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	GCAC	GCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10417218	10417221	GCAC	-	DEL	ATP2B2	NM_001001331	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1312_1309	p.V437fs	1.000:1.000:1.000:1.000	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	(deletion:cds_exon[10417114,10417328])	no_errors	
ATP2B2	491	genome.wustl.edu	37	3	10417224	10417224	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10417224	10417224	A	-	DEL	ATP2B2	NM_001001331	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1306	p.Y436fs	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	(deletion:cds_exon[10417114,10417328])	no_errors	
ATP2B2	491	genome.wustl.edu	37	3	10417227	10417230	+	Frame_Shift_Del	DEL	CGGG	CGGG	-	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	CGGG	CGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10417227	10417230	CGGG	-	DEL	ATP2B2	NM_001001331	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1303_1300	p.P434fs	0.955:0.005:0.993:0.995	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	(deletion:cds_exon[10417114,10417328])	no_errors	
ATP2B2	491	genome.wustl.edu	37	3	10417234	10417235	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10417234	10417235	GC	-	DEL	ATP2B2	NM_001001331	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1296_1295	p.C432fs	1.000:1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	(deletion:cds_exon[10417114,10417328])	no_errors	
BACH2	60468	genome.wustl.edu	37	6	90660232	90660232	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90660232	90660232	G	C	SNP	BACH2	NM_021813	human	genbank	57_37b	-1	validated	missense	c.1593	p.D531E	0.258	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors	
BDKRB1	623	genome.wustl.edu	37	14	96730708	96730708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96730708	96730708	G	A	SNP	BDKRB1	NM_000710	human	genbank	57_37b	+1	reviewed	missense	c.689	p.R230Q	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
BZRAP1	9256	genome.wustl.edu	37	17	56403701	56403701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56403701	56403701	G	A	SNP	BZRAP1	NM_004758	human	genbank	57_37b	-1	validated	missense	c.523	p.R175C	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors	
CASP1	834	genome.wustl.edu	37	11	104905093	104905093	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	104905093	104905093	T	C	SNP	CASP1	NM_033292	human	genbank	57_37b	-1	reviewed	missense	c.116	p.E39G	1.000	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,PatternScan_AMP_BINDING,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	no_errors	
CCDC108	255101	genome.wustl.edu	37	2	219894866	219894866	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219894866	219894866	C	A	SNP	CCDC108	NM_194302	human	genbank	57_37b	-1	provisional	missense	c.1226	p.C409F	0.860	NULL	PatternScan_MGMT,superfamily_PapD-like	-	no_errors	
CHD2	1106	genome.wustl.edu	37	15	93510696	93510696	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	93510696	93510696	A	G	SNP	CHD2	NM_001271	human	genbank	57_37b	+1	reviewed	silent	c.2142	p.E714	0.954	HMMPfam_SNF2_N	HMMSmart_SM00298,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_Chromo domain-like,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Homeodomain-like	-	no_errors	
CILP	8483	genome.wustl.edu	37	15	65490491	65490491	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65490491	65490491	T	A	SNP	CILP	NM_003613	human	genbank	57_37b	-1	reviewed	missense	c.2133	p.E711D	0.942	NULL	PatternScan_HEXAPEP_TRANSFERASES,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
CNOT1	23019	genome.wustl.edu	37	16	58564183	58564183	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58564183	58564183	C	T	SNP	CNOT1	NM_016284	human	genbank	57_37b	-1	validated	silent	c.6246	p.V2082	1.000	HMMPfam_Not1	HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors	
CPSF4	10898	genome.wustl.edu	37	7	99045885	99045885	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99045885	99045885	A	C	SNP	CPSF4	NM_006693	human	genbank	57_37b	+1	validated	missense	c.296	p.Y99S	1.000	HMMSmart_SM00356,HMMPfam_zf-CCCH	HMMSmart_SM00356,HMMPfam_zf-CCCH,superfamily_CCCH zinc finger,HMMPfam_zf-CCHC,HMMSmart_SM00343	-	no_errors	
CREB3	10488	genome.wustl.edu	37	9	35732815	35732815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35732815	35732815	C	A	SNP	CREB3	NM_006368	human	genbank	57_37b	+1	reviewed	missense	c.46	p.L16M	0.999	NULL	superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC	-	no_errors	
CXorf22	170063	genome.wustl.edu	37	X	35984770	35984770	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	35984770	35984770	A	T	SNP	CXorf22	NM_152632	human	genbank	57_37b	+1	validated	missense	c.1499	p.D500V	0.000	NULL	NULL	-	no_errors	
EHMT1	79813	genome.wustl.edu	37	9	140676797	140676797	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140676797	140676797	T	G	SNP	EHMT1	ENST00000460843	human	ensembl	57_37b	+1	known	missense	c.2330	p.L777R	0.969	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317	-	no_errors	
ENSA	2029	genome.wustl.edu	37	1	150601942	150601942	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150601942	150601942	G	T	SNP	ENSA	NM_207042	human	genbank	57_37b	-1	reviewed	missense	c.5	p.S2Y	1.000	NULL	HMMPfam_Endosulfine	-	no_errors	
ENSG00000227087	0	genome.wustl.edu	37	5	79627800	79627800	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79627800	79627800	C	T	SNP	ENSG00000227087	ENST00000424312	human	ensembl	57_37b	-1	known	silent	c.561	p.S187	0.012	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
ENSG00000245360	0	genome.wustl.edu	37	19	19916980	19916980	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19916980	19916980	C	A	SNP	ENSG00000245360	ENST00000499284	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	
ENSG00000247634	0	genome.wustl.edu	37	7	66418079	66418081	+	RNA	DEL	CCT	CCT	-	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	66418079	66418081	CCT	-	DEL	ENSG00000247634	ENST00000500273	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	(deletion:rna[66415756,66418619])	no_errors	
FMN1	342184	genome.wustl.edu	37	15	33261324	33261324	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	33261324	33261324	T	C	SNP	FMN1	NM_001103184	human	genbank	57_37b	-1	inferred	missense	c.1909	p.M637V	0.001	NULL	superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors	
FNBP4	23360	genome.wustl.edu	37	11	47753019	47753019	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47753019	47753019	G	C	SNP	FNBP4	NM_015308	human	genbank	57_37b	-1	validated	missense	c.1915	p.Q639E	0.586	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors	
FRMPD1	22844	genome.wustl.edu	37	9	37708487	37708487	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	37708487	37708487	C	T	SNP	FRMPD1	NM_014907	human	genbank	57_37b	+1	validated	silent	c.351	p.V117	0.000	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
FZD1	8321	genome.wustl.edu	37	7	90895264	90895264	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	90895264	90895264	T	A	SNP	FZD1	NM_003505	human	genbank	57_37b	+1	reviewed	missense	c.1069	p.F357I	1.000	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors	
GAR1	54433	genome.wustl.edu	37	4	110737351	110737351	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110737351	110737351	T	G	SNP	GAR1	NM_018983	human	genbank	57_37b	+1	reviewed	missense	c.31	p.F11V	0.977	NULL	HMMPfam_Gar1	-	no_errors	
GNPAT	8443	genome.wustl.edu	37	1	231406515	231406515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231406515	231406515	G	A	SNP	GNPAT	NM_014236	human	genbank	57_37b	+1	reviewed	missense	c.1291	p.A431T	0.909	NULL	HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC	-	no_errors	
GPR174	84636	genome.wustl.edu	37	X	78426996	78426996	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	78426996	78426996	T	A	SNP	GPR174	NM_032553	human	genbank	57_37b	+1	validated	missense	c.492	p.N164K	0.004	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
HNRNPU	3192	genome.wustl.edu	37	1	245025803	245025803	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245025803	245025803	T	A	SNP	HNRNPU	NM_031844	human	genbank	57_37b	-1	reviewed	missense	c.837	p.E279D	1.000	NULL	superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,HMMSmart_SM00449,HMMPfam_SPRY,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
KIAA1210	57481	genome.wustl.edu	37	X	118222019	118222019	+	Missense_Mutation	SNP	C	C	T	rs61741587	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118222019	118222019	C	T	SNP	KIAA1210	ENST00000440399	human	ensembl	57_37b	-1	known	missense	c.1393	p.G465R	0.000	NULL	NULL	-		
KIF21B	23046	genome.wustl.edu	37	1	200967640	200967640	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200967640	200967640	A	C	SNP	KIF21B	NM_017596	human	genbank	57_37b	-1	provisional	missense	c.1949	p.I650S	0.999	superfamily_WD40_like	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
LAMA3	3909	genome.wustl.edu	37	18	21530014	21530014	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21530014	21530014	C	T	SNP	LAMA3	NM_198129	human	genbank	57_37b	+1	reviewed	missense	c.9533	p.P3178L	0.125	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_CHAPERONINS_CPN60	-	no_errors	
LMX1B	4010	genome.wustl.edu	37	9	129458599	129458599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	129458599	129458599	G	A	SNP	LMX1B	NM_002316	human	genbank	57_37b	+1	validated	missense	c.988	p.D330N	1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
LOC647012	647012	genome.wustl.edu	37	2	139655094	139655094	+	RNA	SNP	G	A	A	rs1351915	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	139655094	139655094	G	A	SNP	LOC647012	XR_017217	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
MAGEB6	158809	genome.wustl.edu	37	X	26213143	26213143	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	26213143	26213143	G	C	SNP	MAGEB6	NM_173523	human	genbank	57_37b	+1	reviewed	missense	c.1180	p.A394P	0.008	NULL	HMMPfam_MAGE	-	no_errors	
MOGAT3	346606	genome.wustl.edu	37	7	100841573	100841573	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100841573	100841573	G	C	SNP	MOGAT3	NM_178176	human	genbank	57_37b	-1	provisional	missense	c.567	p.I189M	0.063	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors	
MTOR	2475	genome.wustl.edu	37	1	11217313	11217313	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11217313	11217313	C	T	SNP	MTOR	NM_004958	human	genbank	57_37b	-1	reviewed	silent	c.4365	p.E1455	1.000	superfamily_ARM-type_fold,superfamily_SSF48452	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195513060	195513060	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195513060	195513060	G	A	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	silent	c.5391	p.D1797	0.000	NULL	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	no_errors	
MXRA5	25878	genome.wustl.edu	37	X	3261749	3261749	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	3261749	3261749	C	T	SNP	MXRA5	NM_015419	human	genbank	57_37b	-1	validated	silent	c.126	p.T42	0.311	HMMSmart_SM00013,superfamily_L domain-like	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors	
MYCL2	0	genome.wustl.edu	37	X	106516125	106516125	+	Missense_Mutation	SNP	G	G	C	rs4826957	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	106516125	106516125	G	C	SNP	MYCL2	ENST00000372451	human	ensembl	57_37b	+1	known	missense	c.314	p.S105T	0.872	HMMPfam_Myc_N	HMMPfam_Myc_N,PatternScan_MIP,superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-		
NBAS	51594	genome.wustl.edu	37	2	15372613	15372613	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	15372613	15372613	C	A	SNP	NBAS	NM_015909	human	genbank	57_37b	-1	validated	missense	c.6169	p.G2057W	0.000	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors	
NUP35	129401	genome.wustl.edu	37	2	184022174	184022174	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	184022174	184022174	T	G	SNP	NUP35	NM_138285	human	genbank	57_37b	+1	reviewed	missense	c.542	p.F181C	1.000	HMMPfam_MPPN	HMMPfam_MPPN	-	no_errors	
PCDHGB7	56099	genome.wustl.edu	37	5	140799111	140799111	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140799111	140799111	T	G	SNP	PCDHGB7	NM_018927	human	genbank	57_37b	+1	reviewed	missense	c.1685	p.V562G	1.000	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PRDM4	11108	genome.wustl.edu	37	12	108145695	108145695	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	108145695	108145695	C	G	SNP	PRDM4	NM_012406	human	genbank	57_37b	-1	reviewed	missense	c.623	p.G208A	1.000	NULL	HMMSmart_SET,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
SCUBE2	57758	genome.wustl.edu	37	11	9074689	9074689	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	9074689	9074689	G	A	SNP	SCUBE2	NM_020974	human	genbank	57_37b	-1	validated	silent	c.1404	p.D468	1.000	NULL	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors	
SEPT14	346288	genome.wustl.edu	37	7	55929654	55929654	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	55929654	55929654	T	C	SNP	SEPT14	NM_207366	human	genbank	57_37b	-1	validated	missense	c.36	p.I12M	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin	-	no_errors	
SHISA6	388336	genome.wustl.edu	37	17	11461131	11461131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11461131	11461131	G	A	SNP	SHISA6	NM_207386	human	genbank	57_37b	+1	validated	missense	c.1166	p.R389H	0.915	NULL	NULL	-	no_errors	
SLC2A13	114134	genome.wustl.edu	37	12	40422247	40422247	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	40422247	40422247	C	G	SNP	SLC2A13	NM_052885	human	genbank	57_37b	-1	validated	missense	c.781	p.E261Q	1.000	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors	
STRBP	55342	genome.wustl.edu	37	9	125898790	125898790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125898790	125898790	C	T	SNP	STRBP	NM_018387	human	genbank	57_37b	-1	validated	missense	c.1502	p.R501K	1.000	NULL	HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors	
TCEB3B	51224	genome.wustl.edu	37	18	44560555	44560555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	44560555	44560555	C	T	SNP	TCEB3B	NM_016427	human	genbank	57_37b	-1	reviewed	missense	c.1081	p.V361M	0.000	NULL	HMMPfam_TFIIS,HMMSmart_TFS2N,HMMPfam_Elongin_A	-	no_errors	
TCF7L1	83439	genome.wustl.edu	37	2	85361198	85361198	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85361198	85361198	C	G	SNP	TCF7L1	NM_031283	human	genbank	57_37b	+1	provisional	silent	c.309	p.A103	0.997	HMMPfam_CTNNB1_binding	HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
TNRC6B	23112	genome.wustl.edu	37	22	40661106	40661106	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40661106	40661106	A	T	SNP	TNRC6B	NM_015088	human	genbank	57_37b	+1	validated	missense	c.872	p.D291V	0.983	NULL	HMMPfam_Ago_hook,superfamily_SSF54928	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579364	7579364	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579364	7579364	C	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.323	p.G108fs	0.910	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7579312,7579590])	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579367	7579367	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579367	7579367	T	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.320	p.Y107C	0.930	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
USP1	7398	genome.wustl.edu	37	1	62914231	62914231	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62914231	62914231	T	A	SNP	USP1	NM_001017415	human	genbank	57_37b	+1	reviewed	missense	c.1516	p.C506S	1.000	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VLDLR	7436	genome.wustl.edu	37	9	2643403	2643403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	2643403	2643403	G	A	SNP	VLDLR	NM_003383	human	genbank	57_37b	+1	reviewed	missense	c.692	p.R231H	1.000	superfamily_LDL receptor-like module,HMMSmart_SM00192	HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00181,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors	
ZDHHC8	29801	genome.wustl.edu	37	22	20127347	20127347	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	20127347	20127347	C	T	SNP	ZDHHC8	NM_013373	human	genbank	57_37b	+1	validated	silent	c.489	p.V163	0.826	NULL	HMMPfam_zf-DHHC	-	no_errors	
ZFYVE28	57732	genome.wustl.edu	37	4	2321938	2321938	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04U-01	TCGA-A2-A04U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2321938	2321938	G	A	SNP	ZFYVE28	NM_020972	human	genbank	57_37b	-1	validated	silent	c.762	p.S254	0.923	NULL	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors	
