Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCF2	10061	genome.wustl.edu	37	7	150916218	150916219	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150916218	150916219	-	C	INS	ABCF2	NM_005692	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.949_948	p.R316fs	0.995:0.690	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADAMTS17	170691	genome.wustl.edu	37	15	100821467	100821467	+	Silent	SNP	G	G	A	rs7496640	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100821467	100821467	G	A	SNP	ADAMTS17	NM_139057	human	genbank	57_37b	-1	reviewed	silent	c.756	p.A252	0.328	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-		
ADAMTS5	11096	genome.wustl.edu	37	21	28302261	28302261	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28302261	28302261	T	C	SNP	ADAMTS5	NM_007038	human	genbank	57_37b	-1	reviewed	silent	c.2169	p.V723	0.009	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
AGFG2	3268	genome.wustl.edu	37	7	100160264	100160264	+	Missense_Mutation	SNP	T	T	C	rs17855473	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100160264	100160264	T	C	SNP	AGFG2	NM_006076	human	genbank	57_37b	+1	reviewed	missense	c.1046	p.M349T	0.002	NULL	HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap	-		
APCDD1	147495	genome.wustl.edu	37	18	10471922	10471922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	10471922	10471922	G	A	SNP	APCDD1	NM_153000	human	genbank	57_37b	+1	validated	missense	c.638	p.R213Q	1.000	NULL	NULL	-	no_errors	
ARHGEF10L	55160	genome.wustl.edu	37	1	17958870	17958870	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17958870	17958870	G	T	SNP	ARHGEF10L	NM_018125	human	genbank	57_37b	+1	validated	missense	c.1639	p.V547L	1.000	superfamily_PH domain-like	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_WD40 repeat-like	-	no_errors	
ARHGEF15	22899	genome.wustl.edu	37	17	8219162	8219162	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8219162	8219162	T	A	SNP	ARHGEF15	NM_173728	human	genbank	57_37b	+1	reviewed	missense	c.1511	p.F504Y	1.000	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF	PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729	-	no_errors	
C10orf67	256815	genome.wustl.edu	37	10	23633566	23633566	+	Silent	SNP	C	C	A	rs2036917	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	23633566	23633566	C	A	SNP	C10orf67	NM_153714	human	genbank	57_37b	-1	validated	silent	c.141	p.R47	0.000	NULL	NULL	-		
C1orf175	374977	genome.wustl.edu	37	1	55165942	55165942	+	Silent	SNP	G	G	A	rs2304310	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55165942	55165942	G	A	SNP	C1orf175	ENST00000371287	human	ensembl	57_37b	+1	known	silent	c.120	p.G40	0.011	NULL	superfamily_ARM repeat	-		
C6orf141	135398	genome.wustl.edu	37	6	49519169	49519169	+	Missense_Mutation	SNP	T	T	C	rs41273692	byCluster;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	49519169	49519169	T	C	SNP	C6orf141	NM_001145652	human	genbank	57_37b	+1	validated	missense	c.664	p.S222P	0.000	NULL	NULL	-		
C9orf61	9413	genome.wustl.edu	37	9	72003036	72003036	+	Silent	SNP	T	T	C	rs867366	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	72003036	72003036	T	C	SNP	C9orf61	ENST00000377216	human	ensembl	57_37b	+1	known	silent	c.180	p.G60	0.048	NULL	NULL	-		
CCDC141	285025	genome.wustl.edu	37	2	179702153	179702153	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179702153	179702153	C	G	SNP	CCDC141	NM_173648	human	genbank	57_37b	-1	provisional	missense	c.2068	p.V690L	0.179	NULL	HMMPfam_I-set	-	no_errors	
CCR2	1231	genome.wustl.edu	37	3	46399864	46399864	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46399864	46399864	A	T	SNP	CCR2	NM_001123041	human	genbank	57_37b	+1	validated	missense	c.846	p.Q282H	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CELSR2	1952	genome.wustl.edu	37	1	109794101	109794101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109794101	109794101	C	T	SNP	CELSR2	NM_001408	human	genbank	57_37b	+1	reviewed	missense	c.1400	p.T467I	0.126	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMSmart_TNFR,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMSmart_HormR,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors	
CLEC17A	388512	genome.wustl.edu	37	19	14705309	14705309	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14705309	14705309	C	T	SNP	CLEC17A	NM_207390	human	genbank	57_37b	+1	validated	silent	c.207	p.T69	0.000	NULL	superfamily_C-type lectin-like,HMMPfam_Lectin_C	-	no_errors	
COL6A6	131873	genome.wustl.edu	37	3	130327755	130327755	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130327755	130327755	G	C	SNP	COL6A6	NM_001102608	human	genbank	57_37b	+1	provisional	missense	c.4699	p.G1567R	0.545	NULL	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
DLGAP4	22839	genome.wustl.edu	37	20	35128703	35128703	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35128703	35128703	C	T	SNP	DLGAP4	NM_014902	human	genbank	57_37b	+1	reviewed	missense	c.2192	p.P731L	0.992	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors	
DNAH14	127602	genome.wustl.edu	37	1	225266935	225266935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	225266935	225266935	G	A	SNP	DNAH14	NM_001373	human	genbank	57_37b	+1	validated	silent	c.2451	p.L817	0.092	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_RVT_thumb,HMMPfam_Dynein_heavy	-	no_errors	
DSCAML1	57453	genome.wustl.edu	37	11	117376409	117376409	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117376409	117376409	A	G	SNP	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	missense	c.2002	p.S668P	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
DYNC1H1	1778	genome.wustl.edu	37	14	102514950	102514950	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102514950	102514950	A	G	SNP	DYNC1H1	NM_001376	human	genbank	57_37b	+1	reviewed	missense	c.13316	p.E4439G	1.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
EIF4ENIF1	56478	genome.wustl.edu	37	22	31836773	31836773	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31836773	31836773	G	C	SNP	EIF4ENIF1	NM_019843	human	genbank	57_37b	-1	reviewed	missense	c.2633	p.P878R	0.774	NULL	HMMPfam_EIF4E-T	-	no_errors	
ENSG00000186082	0	genome.wustl.edu	37	11	35883042	35883042	+	Missense_Mutation	SNP	A	A	G	rs71480090	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	35883042	35883042	A	G	SNP	ENSG00000186082	ENST00000333983	human	ensembl	57_37b	-1	known	missense	c.56	p.V19A	0.001	NULL	HMMPfam_Filament	-		
ENSG00000231497	0	genome.wustl.edu	37	8	86568004	86568004	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	86568004	86568004	G	C	SNP	ENSG00000231497	ENST00000418228	human	ensembl	57_37b	-1	known	missense	c.610	p.L204V	0.971	NULL	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T	-	no_errors	
ENSG00000237362	0	genome.wustl.edu	37	15	80736697	80736698	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	80736697	80736698	GT	-	DEL	ENSG00000237362	ENST00000447682	human	ensembl	57_37b	-1	known	frame_shift_del	c.535_534	p.P179fs	0.557:0.569	NULL	NULL	(deletion:cds_exon[80736628,80736706])	no_errors	
ENSG00000244969	0	genome.wustl.edu	37	9	139271106	139271106	+	RNA	SNP	A	A	G	rs3812563	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139271106	139271106	A	G	SNP	ENSG00000244969	ENST00000501155	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245008	0	genome.wustl.edu	37	11	128552085	128552085	+	RNA	SNP	C	T	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	128552085	128552085	C	T	SNP	ENSG00000245008	ENST00000501648	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000248078	0	genome.wustl.edu	37	18	43915008	43915009	+	RNA	INS	-	-	GT	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43915008	43915009	-	GT	INS	ENSG00000248078	ENST00000422709	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.051:0.062	-	-	-	no_errors	
ERC2	26059	genome.wustl.edu	37	3	56468977	56468977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56468977	56468977	C	T	SNP	ERC2	NM_015576	human	genbank	57_37b	-1	validated	missense	c.59	p.R20H	1.000	NULL	HMMPfam_Cast,superfamily_Prefoldin	-	no_errors	
ERV3	2086	genome.wustl.edu	37	7	64452362	64452362	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	64452362	64452362	C	G	SNP	ERV3	NM_001007253	human	genbank	57_37b	-1	reviewed	missense	c.1043	p.R348P	0.901	NULL	NULL	-	no_errors	
FAM155A	728215	genome.wustl.edu	37	13	108518036	108518036	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	108518036	108518036	G	T	SNP	FAM155A	NM_001080396	human	genbank	57_37b	-1	validated	missense	c.909	p.D303E	1.000	NULL	NULL	-	no_errors	
FAM184A	79632	genome.wustl.edu	37	6	119301436	119301436	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	119301436	119301436	G	C	SNP	FAM184A	NM_024581	human	genbank	57_37b	-1	validated	missense	c.2168	p.T723R	1.000	NULL	NULL	-	no_errors	
FAM69C	125704	genome.wustl.edu	37	18	72109212	72109212	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	72109212	72109212	G	A	SNP	FAM69C	NM_001044369	human	genbank	57_37b	-1	validated	missense	c.1016	p.A339V	0.984	NULL	NULL	-	no_errors	
FAM90A12	645879	genome.wustl.edu	37	8	7885818	7885818	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	7885818	7885818	G	A	SNP	FAM90A12	XM_928853	human	genbank	57_37b	-1	model	silent	c.735	p.S245	0.005	NULL	superfamily_SSF57756	-	no_errors	
FBN3	84467	genome.wustl.edu	37	19	8174244	8174244	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8174244	8174244	C	G	SNP	FBN3	NM_032447	human	genbank	57_37b	-1	reviewed	missense	c.4485	p.E1495D	0.256	superfamily_TB module/8-cys domain	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors	
FLRT1	23769	genome.wustl.edu	37	11	63884894	63884894	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63884894	63884894	C	T	SNP	FLRT1	NM_013280	human	genbank	57_37b	+1	reviewed	silent	c.1155	p.G385	0.000	NULL	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00082,HMMPfam_fn3	-	no_errors	
FUT3	2525	genome.wustl.edu	37	19	5844792	5844792	+	Missense_Mutation	SNP	A	A	C	rs28362459	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5844792	5844792	A	C	SNP	FUT3	NM_000149	human	genbank	57_37b	-1	reviewed	missense	c.59	p.L20R	0.971	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-		
GLIS1	148979	genome.wustl.edu	37	1	54060248	54060248	+	Missense_Mutation	SNP	T	T	C	rs4307514	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	54060248	54060248	T	C	SNP	GLIS1	NM_147193	human	genbank	57_37b	-1	validated	missense	c.328	p.T110A	0.945	NULL	superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-		
GPR110	266977	genome.wustl.edu	37	6	46977783	46977783	+	Missense_Mutation	SNP	C	C	A	rs45598235	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46977783	46977783	C	A	SNP	GPR110	NM_153840	human	genbank	57_37b	-1	validated	missense	c.1388	p.R463L	0.000	NULL	superfamily_SEA domain,HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-		
GPR144	347088	genome.wustl.edu	37	9	127216378	127216378	+	Splice_Site	SNP	T	T	C	rs118108631	by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127216378	127216378	T	C	SNP	GPR144	ENST00000334810	human	ensembl	57_37b	+1	known	splice_site	c.1078+2	e5+2	0.991	-	-	-		
GPR161	23432	genome.wustl.edu	37	1	168059866	168059866	+	Silent	SNP	A	A	G	rs275149	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	168059866	168059866	A	G	SNP	GPR161	NM_153832	human	genbank	57_37b	-1	provisional	silent	c.1140	p.G380	0.009	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
HEATR5A	25938	genome.wustl.edu	37	14	31763097	31763097	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	31763097	31763097	G	A	SNP	HEATR5A	NM_015473	human	genbank	57_37b	-1	validated	missense	c.4954	p.R1652C	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
HEXB	3074	genome.wustl.edu	37	5	73981270	73981270	+	Missense_Mutation	SNP	T	T	C	rs820878	byCluster;byFrequency;by2Hit2Allele	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	73981270	73981270	T	C	SNP	HEXB	NM_000521	human	genbank	57_37b	+1	reviewed	missense	c.185	p.L62S	0.004	superfamily_beta-N-acetylhexosaminidase-like domain	superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases	-		
HINT3	135114	genome.wustl.edu	37	6	126278230	126278230	+	Missense_Mutation	SNP	G	G	C	rs2295005	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	126278230	126278230	G	C	SNP	HINT3	NM_138571	human	genbank	57_37b	+1	validated	missense	c.107	p.G36A	0.042	superfamily_His_triad-like_motif	PatternScan_HIT_1,superfamily_His_triad-like_motif,HMMPfam_HIT	-		
HIST1H2AD	3013	genome.wustl.edu	37	6	26199312	26199312	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26199312	26199312	C	A	SNP	HIST1H2AD	NM_021065	human	genbank	57_37b	-1	reviewed	missense	c.160	p.A54S	0.999	superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
HSPA2	3306	genome.wustl.edu	37	14	65007620	65007620	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65007620	65007620	G	A	SNP	HSPA2	NM_021979	human	genbank	57_37b	+1	validated	missense	c.53	p.C18Y	1.000	superfamily_SSF53067,HMMPfam_HSP70	superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934	-	no_errors	
HYAL2	8692	genome.wustl.edu	37	3	50357070	50357070	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50357070	50357070	G	C	SNP	HYAL2	NM_003773	human	genbank	57_37b	-1	reviewed	missense	c.851	p.A284G	0.490	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors	
IP6K3	117283	genome.wustl.edu	37	6	33703230	33703230	+	Silent	SNP	G	G	A	rs545787	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33703230	33703230	G	A	SNP	IP6K3	NM_001142883	human	genbank	57_37b	-1	reviewed	silent	c.24	p.D8	0.000	NULL	superfamily_SAICAR synthase-like,HMMPfam_IPK	-		
KLHDC7A	127707	genome.wustl.edu	37	1	18808526	18808526	+	Missense_Mutation	SNP	A	C	C	rs2992752	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	18808526	18808526	A	C	SNP	KLHDC7A	NM_152375	human	genbank	57_37b	+1	validated	missense	c.1051	p.T351P	0.000	NULL	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-		
KRTAP10-1	386677	genome.wustl.edu	37	21	45959988	45959988	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45959988	45959988	A	T	SNP	KRTAP10-1	NM_198691	human	genbank	57_37b	-1	reviewed	missense	c.46	p.S16T	0.109	NULL	HMMPfam_Keratin_B2	-	no_errors	
LAMA5	3911	genome.wustl.edu	37	20	60885879	60885879	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60885879	60885879	C	G	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	missense	c.10288	p.V3430L	0.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
LOC100129118	0	genome.wustl.edu	37	19	14903297	14903297	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14903297	14903297	T	C	SNP	LOC100129118	XM_001726779	human	genbank	57_37b	+1	model	silent	c.168	p.Y56	0.998	NULL	HMMPfam_DUF1242	-	no_errors	
LOC731932	731932	genome.wustl.edu	37	13	47033313	47033313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	47033313	47033313	C	T	SNP	LOC731932	XM_001716667	human	genbank	57_37b	-1	model	missense	c.236	p.G79D	0.004	NULL	NULL	-	no_errors	
LRRC41	10489	genome.wustl.edu	37	1	46768864	46768864	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46768864	46768864	G	C	SNP	LRRC41	NM_006369	human	genbank	57_37b	-1	validated	missense	c.131	p.P44R	1.000	NULL	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
LRRK2	120892	genome.wustl.edu	37	12	40745469	40745469	+	Silent	SNP	C	C	T	rs34869625	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	40745469	40745469	C	T	SNP	LRRK2	NM_198578	human	genbank	57_37b	+1	reviewed	silent	c.6510	p.G2170	0.996	superfamily_WD40_like	superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2	-		
MAGI2	9863	genome.wustl.edu	37	7	77762343	77762343	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	77762343	77762343	C	G	SNP	MAGI2	NM_012301	human	genbank	57_37b	-1	reviewed	missense	c.3066	p.E1022D	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors	
MDS1	4197	genome.wustl.edu	37	3	168833597	168833597	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	168833597	168833597	G	T	SNP	MDS1	ENST00000494292	human	ensembl	57_37b	-1	known	missense	c.2063	p.A688D	1.000	NULL	HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
MLL	4297	genome.wustl.edu	37	11	118375750	118375750	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118375750	118375750	A	C	SNP	MLL	NM_005933	human	genbank	57_37b	+1	validated	missense	c.9134	p.K3045T	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_RECR,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_FYRN,HMMSmart_SM00541,PatternScan_EF_HAND_1,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151873388	151873390	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151873388	151873390	TTC	-	DEL	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	in_frame_del	c.9150_9148	p.E3050in_frame_del	0.989:1.000:1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	(deletion:cds_exon[151873276,151875095])	no_errors	
MUC2	4583	genome.wustl.edu	37	11	1103873	1103873	+	Silent	SNP	C	C	T	rs11245957	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1103873	1103873	C	T	SNP	MUC2	NM_002457	human	genbank	57_37b	+1	reviewed	silent	c.8160	p.Y2720	0.000	HMMPfam_Cys_knot,HMMSmart_SM00041	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-		
NARS2	79731	genome.wustl.edu	37	11	78154716	78154716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78154716	78154716	C	T	SNP	NARS2	NM_024678	human	genbank	57_37b	-1	validated	missense	c.1253	p.R418H	0.423	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases	superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases	-	no_errors	
NDUFS2	4720	genome.wustl.edu	37	1	161183954	161183954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161183954	161183954	G	A	SNP	NDUFS2	NM_004550	human	genbank	57_37b	+1	reviewed	missense	c.1363	p.D455N	1.000	superfamily_SSF56762,HMMPfam_Complex1_49kDa	superfamily_SSF56762,PatternScan_COMPLEX1_49K,HMMPfam_Complex1_49kDa	-	no_errors	
NLRP5	126206	genome.wustl.edu	37	19	56569642	56569642	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56569642	56569642	G	A	SNP	NLRP5	NM_153447	human	genbank	57_37b	+1	reviewed	silent	c.3336	p.E1112	0.009	superfamily_SSF52047	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT,superfamily_SSF52047	-	no_errors	
OR2H2	7932	genome.wustl.edu	37	6	29555864	29555864	+	Missense_Mutation	SNP	C	C	T	rs114937958	byCluster;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29555864	29555864	C	T	SNP	OR2H2	NM_007160	human	genbank	57_37b	+1	provisional	missense	c.143	p.A48V	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
OR52N2	390077	genome.wustl.edu	37	11	5842404	5842404	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5842404	5842404	C	G	SNP	OR52N2	NM_001005174	human	genbank	57_37b	+1	provisional	missense	c.839	p.A280G	0.755	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PARP15	165631	genome.wustl.edu	37	3	122296638	122296638	+	Missense_Mutation	SNP	G	G	A	rs1875272	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122296638	122296638	G	A	SNP	PARP15	NM_001113523	human	genbank	57_37b	+1	validated	missense	c.124	p.V42M	0.004	NULL	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP	-		
PARP8	79668	genome.wustl.edu	37	5	50091197	50091197	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	50091197	50091197	C	A	SNP	PARP8	NM_024615	human	genbank	57_37b	+1	provisional	silent	c.1374	p.T458	1.000	NULL	superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors	
PIGR	5284	genome.wustl.edu	37	1	207109116	207109116	+	Missense_Mutation	SNP	C	C	T	rs2275531	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207109116	207109116	C	T	SNP	PIGR	NM_002644	human	genbank	57_37b	-1	reviewed	missense	c.1093	p.G365S	1.000	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG	-		
PKD1L1	168507	genome.wustl.edu	37	7	47879049	47879049	+	Missense_Mutation	SNP	G	G	A	rs76100363	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47879049	47879049	G	A	SNP	PKD1L1	NM_138295	human	genbank	57_37b	-1	reviewed	missense	c.5764	p.R1922W	0.005	NULL	HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel	-		
PPP1R9A	55607	genome.wustl.edu	37	7	94750069	94750069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	94750069	94750069	C	T	SNP	PPP1R9A	NM_017650	human	genbank	57_37b	+1	validated	missense	c.1574	p.A525V	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors	
PTCHD3	374308	genome.wustl.edu	37	10	27687828	27687828	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27687828	27687828	A	C	SNP	PTCHD3	NM_001034842	human	genbank	57_37b	-1	validated	missense	c.1699	p.C567G	0.998	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
PXN	5829	genome.wustl.edu	37	12	120661977	120661977	+	Missense_Mutation	SNP	T	T	C	rs4767884	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120661977	120661977	T	C	SNP	PXN	NM_001080855	human	genbank	57_37b	-1	validated	missense	c.217	p.S73G	0.028	HMMPfam_Paxillin	HMMPfam_Paxillin,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-		
RAE1	8480	genome.wustl.edu	37	20	55949798	55949798	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	55949798	55949798	T	A	SNP	RAE1	NM_001015885	human	genbank	57_37b	+1	reviewed	missense	c.961	p.C321S	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors	
RBM33	155435	genome.wustl.edu	37	7	155537935	155537935	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	155537935	155537935	G	T	SNP	RBM33	NM_053043	human	genbank	57_37b	+1	validated	missense	c.2618	p.R873I	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360	-	no_errors	
RDH14	57665	genome.wustl.edu	37	2	18736890	18736890	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	18736890	18736890	T	C	SNP	RDH14	NM_020905	human	genbank	57_37b	-1	validated	missense	c.578	p.K193R	1.000	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors	
RRP12	23223	genome.wustl.edu	37	10	99133604	99133604	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99133604	99133604	C	T	SNP	RRP12	NM_015179	human	genbank	57_37b	-1	validated	missense	c.1846	p.D616N	1.000	superfamily_ARM repeat,HMMPfam_NUC173	superfamily_ARM repeat,HMMPfam_NUC173	-	no_errors	
SCARF1	8578	genome.wustl.edu	37	17	1542190	1542190	+	Missense_Mutation	SNP	G	G	A	rs2272011	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1542190	1542190	G	A	SNP	SCARF1	NM_003693	human	genbank	57_37b	-1	reviewed	missense	c.1274	p.A425V	0.000	NULL	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain	-		
SF4	57794	genome.wustl.edu	37	19	19390185	19390185	+	Silent	SNP	G	G	A	rs11555053	byCluster;byFrequency;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19390185	19390185	G	A	SNP	SF4	NM_172231	human	genbank	57_37b	-1	validated	silent	c.1365	p.Y455	0.998	NULL	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,HMMSmart_SM00443,HMMPfam_G-patch	-		
SFI1	9814	genome.wustl.edu	37	22	31942922	31942922	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31942922	31942922	G	A	SNP	SFI1	NM_001007467	human	genbank	57_37b	+1	validated	silent	c.414	p.E138	0.998	NULL	NULL	-	no_errors	
SHPK	23729	genome.wustl.edu	37	17	3524661	3524661	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3524661	3524661	G	A	SNP	SHPK	NM_013276	human	genbank	57_37b	-1	reviewed	silent	c.693	p.A231	0.000	superfamily_Actin-like ATPase domain,HMMPfam_FGGY_N	superfamily_Actin-like ATPase domain,HMMPfam_FGGY_N	-	no_errors	
SNAP91	9892	genome.wustl.edu	37	6	84366485	84366485	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	84366485	84366485	T	C	SNP	SNAP91	NM_014841	human	genbank	57_37b	-1	validated	missense	c.646	p.I216V	1.000	HMMPfam_ANTH,superfamily_GAT-like domain	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_GAT-like domain	-	no_errors	
SNX25	83891	genome.wustl.edu	37	4	186180136	186180136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186180136	186180136	G	A	SNP	SNX25	NM_031953	human	genbank	57_37b	+1	validated	missense	c.157	p.V53M	0.998	HMMPfam_PXA	HMMPfam_PXA,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_PX,HMMSmart_PX,HMMPfam_PX,HMMPfam_Nexin_C	-	no_errors	
SORCS2	57537	genome.wustl.edu	37	4	7725534	7725534	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7725534	7725534	C	T	SNP	SORCS2	NM_020777	human	genbank	57_37b	+1	reviewed	silent	c.2535	p.P845	0.071	HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD	-	no_errors	
SSPO	23145	genome.wustl.edu	37	7	149474393	149474393	+	Missense_Mutation	SNP	A	A	G	rs709061	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149474393	149474393	A	G	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	missense	c.437	p.Q146R	0.174	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-		
SUZ12	23512	genome.wustl.edu	37	17	30267315	30267315	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	30267315	30267315	G	C	SNP	SUZ12	NM_015355	human	genbank	57_37b	+1	reviewed	missense	c.285	p.Q95H	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_VEFS-Box	-	no_errors	
TACC2	10579	genome.wustl.edu	37	10	124009124	124009124	+	Missense_Mutation	SNP	G	G	C	rs56075957	byCluster;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	124009124	124009124	G	C	SNP	TACC2	NM_206862	human	genbank	57_37b	+1	reviewed	missense	c.8726	p.S2909T	1.000	HMMPfam_TACC	HMMPfam_TACC	-		
TAF1L	138474	genome.wustl.edu	37	9	32634818	32634818	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32634818	32634818	G	A	SNP	TAF1L	NM_153809	human	genbank	57_37b	-1	provisional	nonsense	c.760	p.R254*	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
TCHHL1	126637	genome.wustl.edu	37	1	152058008	152058008	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152058008	152058008	T	A	SNP	TCHHL1	NM_001008536	human	genbank	57_37b	-1	provisional	missense	c.2150	p.Q717L	0.025	NULL	PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100	-	no_errors	
TCTN2	79867	genome.wustl.edu	37	12	124191572	124191572	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124191572	124191572	G	A	SNP	TCTN2	NM_024809	human	genbank	57_37b	+1	validated	missense	c.1936	p.E646K	1.000	NULL	HMMPfam_DUF1619	-	no_errors	
TMEM195	392636	genome.wustl.edu	37	7	15584395	15584395	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	15584395	15584395	A	G	SNP	TMEM195	NM_001004320	human	genbank	57_37b	-1	provisional	splice_site	c.409+2	e3+2	1.000	-	-	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7574003	7574003	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.1024	p.R342*	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TSPAN11	441631	genome.wustl.edu	37	12	31135478	31135478	+	Silent	SNP	T	T	C	rs35089	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	31135478	31135478	T	C	SNP	TSPAN11	NM_001080509	human	genbank	57_37b	+1	validated	silent	c.468	p.C156	0.849	HMMPfam_Tetraspannin,superfamily_Tetraspanin	PatternScan_TM4_1,HMMPfam_Tetraspannin,superfamily_Tetraspanin	-		
UBQLN1	29979	genome.wustl.edu	37	9	86292621	86292649	+	Splice_Site	DEL	CCTGAGTTGTTAAAAGCATACCTCCTACT	CCTGAGTTGTTAAAAGCATACCTCCTACT	-	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	CCTGAGTTGTTAAAAGCATACCTCCTACT	CCTGAGTTGTTAAAAGCATACCTCCTACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	86292621	86292649	CCTGAGTTGTTAAAAGCATACCTCCTACT	-	DEL	UBQLN1	NM_013438	human	genbank	57_37b	-1	reviewed	splice_site_del	c.1105+9_1105+1	e7-1	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.027:0.031:0.025:0.000:0.000:0.000:0.000:0.161:0.140:0.934:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[86284243,86292641], cds_exon[86292642,86292876])	no_errors	
UHRF1BP1L	23074	genome.wustl.edu	37	12	100451829	100451829	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	100451829	100451829	G	C	SNP	UHRF1BP1L	NM_015054	human	genbank	57_37b	-1	validated	missense	c.3226	p.L1076V	1.000	NULL	NULL	-	no_errors	
UNC119	9094	genome.wustl.edu	37	17	26875691	26875691	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26875691	26875691	T	C	SNP	UNC119	NM_005148	human	genbank	57_37b	-1	reviewed	missense	c.253	p.K85E	1.000	superfamily_E set domains,HMMPfam_GMP_PDE_delta	superfamily_E set domains,HMMPfam_GMP_PDE_delta	-	no_errors	
VASH1	22846	genome.wustl.edu	37	14	77244414	77244414	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77244414	77244414	G	T	SNP	VASH1	NM_014909	human	genbank	57_37b	+1	validated	missense	c.1025	p.R342L	1.000	NULL	NULL	-	no_errors	
WWC1	23286	genome.wustl.edu	37	5	167850748	167850748	+	Silent	SNP	A	G	G	rs12054944	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167850748	167850748	A	G	SNP	WWC1	NM_015238	human	genbank	57_37b	+1	reviewed	silent	c.1485	p.S495	0.023	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-		
ZNF430	80264	genome.wustl.edu	37	19	21240799	21240799	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	21240799	21240799	C	A	SNP	ZNF430	NM_025189	human	genbank	57_37b	+1	validated	nonsense	c.1685	p.S562*	0.969	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF524	147807	genome.wustl.edu	37	19	56113589	56113589	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A2-A0YJ-01	TCGA-A2-A0YJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56113589	56113589	G	C	SNP	ZNF524	NM_153219	human	genbank	57_37b	+1	validated	silent	c.111	p.G37	0.016	NULL	HMMPfam_AT_hook,HMMSmart_AT_hook,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
