Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ARFGEF2	10564	genome.wustl.edu	37	20	47569307	47569307	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47569307	47569307	G	A	SNP	ARFGEF2	NM_006420	human	genbank	57_37b	+1	reviewed	silent	c.489	p.V163	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981	-	no_errors	
ASB16	92591	genome.wustl.edu	37	17	42248296	42248296	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42248296	42248296	G	A	SNP	ASB16	NM_080863	human	genbank	57_37b	+1	reviewed	missense	c.139	p.A47T	0.011	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_SOCS_box	-	no_errors	
CRMP1	1400	genome.wustl.edu	37	4	5838513	5838513	+	Silent	SNP	C	C	G	rs12331	byCluster;byFrequency;by1000genomes	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	5838513	5838513	C	G	SNP	CRMP1	NM_001014809	human	genbank	57_37b	-1	reviewed	silent	c.1431	p.T477	0.466	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	-		
CSMD1	64478	genome.wustl.edu	37	8	3165943	3165943	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	3165943	3165943	A	T	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	silent	c.3717	p.T1239	0.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
DIDO1	11083	genome.wustl.edu	37	20	61542268	61542268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61542268	61542268	C	T	SNP	DIDO1	NM_033081	human	genbank	57_37b	-1	reviewed	missense	c.697	p.D233N	0.004	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC	-	no_errors	
DIDO1	11083	genome.wustl.edu	37	20	61542482	61542482	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61542482	61542482	C	T	SNP	DIDO1	NM_033081	human	genbank	57_37b	-1	reviewed	silent	c.483	p.L161	0.993	NULL	HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors	
ENSG00000235531	0	genome.wustl.edu	37	8	72965231	72965231	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	72965231	72965231	A	T	SNP	ENSG00000235531	ENST00000457356	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	
ENSG00000247742	0	genome.wustl.edu	37	12	118589084	118589085	+	RNA	DEL	GC	GC	-	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	118589084	118589085	GC	-	DEL	ENSG00000247742	ENST00000501743	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.006:0.002	-	-	(deletion:rna[118588782,118590914])	no_errors	
ERC1	23085	genome.wustl.edu	37	12	1553842	1553842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	1553842	1553842	C	T	SNP	ERC1	NM_178040	human	genbank	57_37b	+1	reviewed	missense	c.3139	p.P1047S	1.000	NULL	HMMPfam_Cast,superfamily_Prefoldin,HMMPfam_RBD-FIP	-	no_errors	
IFIT1L	439996	genome.wustl.edu	37	10	91143442	91143442	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	91143442	91143442	T	C	SNP	IFIT1L	NM_001010987	human	genbank	57_37b	+1	provisional	silent	c.372	p.T124	0.000	superfamily_TPR-like,HMMSmart_SM00028	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors	
KLHL1	57626	genome.wustl.edu	37	13	70514225	70514225	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	70514225	70514225	C	T	SNP	KLHL1	NM_020866	human	genbank	57_37b	-1	validated	missense	c.961	p.A321T	1.000	HMMPfam_BACK	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
LOC100288105	0	genome.wustl.edu	37	5	140242452	140242452	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140242452	140242452	C	-	DEL	LOC100288105	XM_002342568	human	genbank	57_37b	-1	model	frame_shift_del	c.524	p.G175fs	0.992	NULL	NULL	(deletion:cds_exon[140242397,140242975])	no_errors	
LRRN3	54674	genome.wustl.edu	37	7	110762901	110762901	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	110762901	110762901	A	T	SNP	LRRN3	NM_001099658	human	genbank	57_37b	+1	validated	nonsense	c.73	p.K25*	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00013,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
LRRN3	54674	genome.wustl.edu	37	7	110762901	110762901	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	110762901	110762901	A	T	SNP	LRRN3	NM_001099658	human	genbank	57_37b	+1	validated	nonsense	c.73	p.K25*	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00013,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
MAPK8	5599	genome.wustl.edu	37	10	49609776	49609776	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	49609776	49609776	C	T	SNP	MAPK8	NM_139047	human	genbank	57_37b	+1	reviewed	nonsense	c.73	p.R25*	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAPK8	5599	genome.wustl.edu	37	10	49609776	49609776	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	49609776	49609776	C	T	SNP	MAPK8	NM_139047	human	genbank	57_37b	+1	reviewed	nonsense	c.73	p.R25*	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MMD	23531	genome.wustl.edu	37	17	53488766	53488766	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	53488766	53488766	G	A	SNP	MMD	NM_012329	human	genbank	57_37b	-1	reviewed	missense	c.121	p.P41S	1.000	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors	
PCDHB13	56123	genome.wustl.edu	37	5	140595229	140595229	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140595229	140595229	C	A	SNP	PCDHB13	NM_018933	human	genbank	57_37b	+1	reviewed	missense	c.1534	p.H512N	0.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178921552	178921552	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178921552	178921552	A	C	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1034	p.N345T	1.000	HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRR11	55771	genome.wustl.edu	37	17	57262856	57262856	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57262856	57262856	T	C	SNP	PRR11	NM_018304	human	genbank	57_37b	+1	validated	missense	c.335	p.L112P	0.885	NULL	NULL	-	no_errors	
RET	5979	genome.wustl.edu	37	10	43601945	43601945	+	Missense_Mutation	SNP	G	G	A	rs80236571	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43601945	43601945	G	A	SNP	RET	NM_020975	human	genbank	57_37b	+1	reviewed	missense	c.989	p.R330Q	0.974	NULL	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-		
RPL5	6125	genome.wustl.edu	37	1	93300436	93300436	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	93300436	93300436	C	G	SNP	RPL5	NM_000969	human	genbank	57_37b	+1	reviewed	missense	c.290	p.A97G	1.000	superfamily_Translational machinery components,HMMPfam_Ribosomal_L18p	superfamily_Translational machinery components,HMMPfam_Ribosomal_L18p	-	no_errors	
SLCO1B1	10599	genome.wustl.edu	37	12	21329823	21329823	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21329823	21329823	T	C	SNP	SLCO1B1	NM_006446	human	genbank	57_37b	+1	reviewed	missense	c.473	p.V158A	0.002	superfamily_MFS general substrate transporter,HMMPfam_OATP	superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors	
UBR5	51366	genome.wustl.edu	37	8	103335715	103335715	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103335715	103335715	C	A	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	missense	c.1608	p.L536F	1.000	NULL	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
WDR13	64743	genome.wustl.edu	37	X	48457777	48457777	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48457777	48457777	G	-	DEL	WDR13	NM_017883	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.319	p.H108fs	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	(deletion:cds_exon[48457741,48457850])	no_errors	
WDR13	64743	genome.wustl.edu	37	X	48457777	48457777	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48457777	48457777	G	-	DEL	WDR13	NM_017883	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.319	p.H108fs	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	(deletion:cds_exon[48457741,48457850])	no_errors	
ZPLD1	131368	genome.wustl.edu	37	3	102196287	102196287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	102196287	102196287	G	A	SNP	ZPLD1	NM_175056	human	genbank	57_37b	+1	provisional	missense	c.1121	p.G374D	1.000	NULL	HMMPfam_Zona_pellucida,HMMSmart_ZP	-	no_errors	
ZRANB3	84083	genome.wustl.edu	37	2	135966549	135966549	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A7-A0D9-01	TCGA-A7-A0D9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	135966549	135966549	C	A	SNP	ZRANB3	NM_032143	human	genbank	57_37b	-1	provisional	splice_site	c.2496-1	e17-1	1.000	-	-	-	no_errors	
