Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB8	11194	genome.wustl.edu	37	7	150741305	150741305	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150741305	150741305	G	T	SNP	ABCB8	NM_007188	human	genbank	57_37b	+1	reviewed	missense	c.2013	p.W671C	0.995	superfamily_SSF52540	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ANKRD17	26057	genome.wustl.edu	37	4	74124302	74124303	+	In_Frame_Ins	INS	-	-	GGC	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74124302	74124303	-	GGC	INS	ANKRD17	NM_032217	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.84_83	p.31in_frame_insP	0.492:0.144	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_MutS_V,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors	
ATAD2B	54454	genome.wustl.edu	37	2	24092569	24092569	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	24092569	24092569	C	A	SNP	ATAD2B	NM_017552	human	genbank	57_37b	-1	validated	missense	c.1040	p.R347I	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
BAHCC1	57597	genome.wustl.edu	37	17	79414307	79414307	+	Missense_Mutation	SNP	A	A	G	rs7213444	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A7-A13F-01	TCGA-A7-A13F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79414307	79414307	A	G	SNP	BAHCC1	ENST00000436173	human	ensembl	57_37b	+1	known	missense	c.3409	p.T1137A	0.000	NULL	HMMPfam_BAH,HMMSmart_SM00439	-		
BAZ2A	11176	genome.wustl.edu	37	12	56992725	56992725	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56992725	56992725	C	A	SNP	BAZ2A	NM_013449	human	genbank	57_37b	-1	validated	missense	c.5479	p.V1827L	1.000	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_AT_hook,HMMSmart_SM00384,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
BIRC6	57448	genome.wustl.edu	37	2	32822992	32822992	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32822992	32822992	G	T	SNP	BIRC6	NM_016252	human	genbank	57_37b	+1	reviewed	missense	c.13787	p.S4596I	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors	
C17orf101	79701	genome.wustl.edu	37	17	80369359	80369359	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80369359	80369359	T	A	SNP	C17orf101	NM_175902	human	genbank	57_37b	-1	validated	missense	c.352	p.T118S	1.000	HMMSmart_SM00702	HMMSmart_SM00702	-	no_errors	
C21orf57	54059	genome.wustl.edu	37	21	47707039	47707040	+	Splice_Site	INS	-	-	AAAAA	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47707039	47707040	-	AAAAA	INS	C21orf57	NM_058181	human	genbank	57_37b	+1	validated	splice_site_ins	c.210+2_210+1	e1+2	1.000:0.124	-	-	-	no_errors	
CAMKK1	84254	genome.wustl.edu	37	17	3776749	3776749	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3776749	3776749	T	G	SNP	CAMKK1	NM_172207	human	genbank	57_37b	-1	reviewed	missense	c.1118	p.D373A	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CNOT3	4849	genome.wustl.edu	37	19	54650352	54650352	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54650352	54650352	G	C	SNP	CNOT3	NM_014516	human	genbank	57_37b	+1	validated	missense	c.853	p.D285H	1.000	NULL	HMMPfam_Not3,HMMPfam_NOT2_3_5	-	no_errors	
DDR2	4921	genome.wustl.edu	37	1	162743378	162743378	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	162743378	162743378	G	C	SNP	DDR2	NM_001014796	human	genbank	57_37b	+1	reviewed	missense	c.1848	p.K616N	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
DPY19L3	147991	genome.wustl.edu	37	19	32968544	32968544	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	32968544	32968544	G	A	SNP	DPY19L3	NM_207325	human	genbank	57_37b	+1	validated	missense	c.1814	p.R605K	1.000	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors	
DSPP	1834	genome.wustl.edu	37	4	88535329	88535329	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88535329	88535329	T	A	SNP	DSPP	NM_014208	human	genbank	57_37b	+1	reviewed	missense	c.1515	p.S505R	0.998	NULL	NULL	-	no_errors	
ENSG00000245321	0	genome.wustl.edu	37	21	44520691	44520691	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44520691	44520691	T	C	SNP	ENSG00000245321	ENST00000499813	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
FAM169A	26049	genome.wustl.edu	37	5	74077801	74077803	+	In_Frame_Del	DEL	CAT	CAT	-	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	CAT	CAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	74077801	74077803	CAT	-	DEL	FAM169A	NM_015566	human	genbank	57_37b	-1	validated	in_frame_del	c.1497_1495	p.M499in_frame_del	0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[74077285,74077833])	no_errors	
FAM169A	26049	genome.wustl.edu	37	5	74077801	74077803	+	In_Frame_Del	DEL	CAT	CAT	-	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	CAT	CAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	74077801	74077803	CAT	-	DEL	FAM169A	NM_015566	human	genbank	57_37b	-1	validated	in_frame_del	c.1497_1495	p.M499in_frame_del	0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[74077285,74077833])	no_errors	
FAM26D	221301	genome.wustl.edu	37	6	116879271	116879271	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	116879271	116879271	T	C	SNP	FAM26D	NM_153036	human	genbank	57_37b	+1	validated	missense	c.284	p.L95S	0.033	NULL	NULL	-	no_errors	
FAM46A	55603	genome.wustl.edu	37	6	82459981	82459982	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	82459981	82459982	TC	-	DEL	FAM46A	NM_017633	human	genbank	57_37b	-1	validated	frame_shift_del	c.760_759	p.E253fs	1.000:1.000	HMMPfam_DUF1693	HMMPfam_DUF1693	(deletion:cds_exon[82459412,82460188])	no_errors	
FAM46A	55603	genome.wustl.edu	37	6	82459981	82459982	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	82459981	82459982	TC	-	DEL	FAM46A	NM_017633	human	genbank	57_37b	-1	validated	frame_shift_del	c.760_759	p.E253fs	1.000:1.000	HMMPfam_DUF1693	HMMPfam_DUF1693	(deletion:cds_exon[82459412,82460188])	no_errors	
FOLH1	2346	genome.wustl.edu	37	11	49221856	49221856	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	49221856	49221856	T	C	SNP	FOLH1	NM_004476	human	genbank	57_37b	-1	reviewed	missense	c.362	p.N121S	0.998	superfamily_Transferrin receptor ectodomain apical domain	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	-	no_errors	
GP1BA	2811	genome.wustl.edu	37	17	4837763	4837763	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4837763	4837763	C	T	SNP	GP1BA	NM_000173	human	genbank	57_37b	+1	reviewed	silent	c.1825	p.L609	0.984	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT	-	no_errors	
KCNIP2	30819	genome.wustl.edu	37	10	103588945	103588945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103588945	103588945	C	T	SNP	KCNIP2	NM_014591	human	genbank	57_37b	-1	reviewed	missense	c.280	p.D94N	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
KRTAP4-6	81871	genome.wustl.edu	37	17	39296423	39296423	+	Missense_Mutation	SNP	C	C	T	rs349790	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39296423	39296423	C	T	SNP	KRTAP4-6	ENST00000345847	human	ensembl	57_37b	-1	known	missense	c.317	p.R106H	0.000	NULL	HMMPfam_Keratin_B2	-		
LOC100128511	0	genome.wustl.edu	37	10	21462603	21462603	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21462603	21462603	A	G	SNP	LOC100128511	XM_001716027	human	genbank	57_37b	+1	model	silent	c.402	p.S134	0.001	NULL	NULL	-	no_errors	
LOC148709	148709	genome.wustl.edu	37	1	202842935	202842935	+	RNA	SNP	C	C	T	rs3795590	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202842935	202842935	C	T	SNP	LOC148709	NR_002929	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
LTBP2	4053	genome.wustl.edu	37	14	74975371	74975371	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74975371	74975371	G	A	SNP	LTBP2	NM_000428	human	genbank	57_37b	-1	reviewed	silent	c.3588	p.H1196	0.304	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors	
MUC2	4583	genome.wustl.edu	37	11	1101090	1101090	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1101090	1101090	G	A	SNP	MUC2	NM_002457	human	genbank	57_37b	+1	reviewed	missense	c.7477	p.V2493I	0.000	HMMSmart_SM00214,PatternScan_VWFC_1	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
NID1	4811	genome.wustl.edu	37	1	236157078	236157078	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236157078	236157078	G	A	SNP	NID1	NM_002508	human	genbank	57_37b	-1	reviewed	silent	c.2622	p.F874	0.989	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228506585	228506585	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228506585	228506585	T	C	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.14132	p.V4711A	0.993	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
OLFML2B	25903	genome.wustl.edu	37	1	161954711	161954711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161954711	161954711	G	A	SNP	OLFML2B	NM_015441	human	genbank	57_37b	-1	provisional	missense	c.1534	p.R512W	1.000	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors	
OR5R1	219479	genome.wustl.edu	37	11	56185039	56185039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56185039	56185039	C	T	SNP	OR5R1	NM_001004744	human	genbank	57_37b	-1	provisional	missense	c.670	p.A224T	0.003	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PEX2	0	genome.wustl.edu	37	8	77895909	77895909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77895909	77895909	C	T	SNP	PEX2	NM_000318	human	genbank	57_37b	-1	reviewed	missense	c.506	p.R169H	1.000	HMMPfam_Pex2_Pex12	HMMPfam_Pex2_Pex12,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
PRKCE	5581	genome.wustl.edu	37	2	46070194	46070194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	46070194	46070194	C	T	SNP	PRKCE	NM_005400	human	genbank	57_37b	+1	reviewed	missense	c.404	p.S135L	0.749	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
RPGRIP1	57096	genome.wustl.edu	37	14	21796707	21796707	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21796707	21796707	A	T	SNP	RPGRIP1	NM_020366	human	genbank	57_37b	+1	reviewed	missense	c.3020	p.H1007L	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors	
SMCR8	140775	genome.wustl.edu	37	17	18221324	18221324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18221324	18221324	G	A	SNP	SMCR8	NM_144775	human	genbank	57_37b	+1	validated	missense	c.2221	p.A741T	0.280	NULL	NULL	-	no_errors	
SNAI1	6615	genome.wustl.edu	37	20	48604456	48604456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48604456	48604456	C	T	SNP	SNAI1	NM_005985	human	genbank	57_37b	+1	reviewed	missense	c.658	p.R220C	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
SPHK2	56848	genome.wustl.edu	37	19	49129267	49129267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49129267	49129267	C	T	SNP	SPHK2	NM_020126	human	genbank	57_37b	+1	provisional	silent	c.159	p.G53	1.000	NULL	HMMPfam_DAGK_cat,HMMSmart_SM00046	-	no_errors	
TFAP2A	7020	genome.wustl.edu	37	6	10410138	10410138	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10410138	10410138	A	G	SNP	TFAP2A	NM_003220	human	genbank	57_37b	-1	reviewed	missense	c.476	p.V159A	1.000	NULL	HMMPfam_TF_AP-2	-	no_errors	
TPTE2	93492	genome.wustl.edu	37	13	19999927	19999927	+	Silent	SNP	T	T	G	rs4544103	byCluster	TCGA-A7-A13F-01	TCGA-A7-A13F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19999927	19999927	T	G	SNP	TPTE2	ENST00000382977	human	ensembl	57_37b	-1	known	silent	c.988	p.R330	0.137	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_PTEN_C2	-		
TRPC1	7220	genome.wustl.edu	37	3	142503607	142503607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142503607	142503607	G	A	SNP	TRPC1	NM_003304	human	genbank	57_37b	+1	validated	missense	c.920	p.G307D	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans	-	no_errors	
VAV1	7409	genome.wustl.edu	37	19	6833625	6833625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6833625	6833625	G	A	SNP	VAV1	NM_005428	human	genbank	57_37b	+1	reviewed	missense	c.1697	p.R566Q	0.665	superfamily_SSF57889,HMMPfam_C1_1	HMMPfam_CH,superfamily_Calponin-homology,HMMSmart_CH,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_1,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors	
WDR44	54521	genome.wustl.edu	37	X	117540916	117540916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	117540916	117540916	C	T	SNP	WDR44	NM_019045	human	genbank	57_37b	+1	validated	missense	c.1460	p.A487V	1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
YSK4	80122	genome.wustl.edu	37	2	135745195	135745195	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13F-01	TCGA-A7-A13F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	135745195	135745195	G	C	SNP	YSK4	NM_025052	human	genbank	57_37b	-1	validated	missense	c.1247	p.A416G	0.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
