Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
A2ML1	144568	genome.wustl.edu	37	12	8995779	8995779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8995779	8995779	G	A	SNP	A2ML1	NM_144670	human	genbank	57_37b	+1	validated	missense	c.1298	p.R433H	0.108	NULL	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors	
ACAP2	23527	genome.wustl.edu	37	3	195102673	195102673	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195102673	195102673	G	A	SNP	ACAP2	NM_012287	human	genbank	57_37b	-1	validated	nonsense	c.190	p.R64*	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors	
ACO2	50	genome.wustl.edu	37	22	41921257	41921257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41921257	41921257	G	A	SNP	ACO2	NM_001098	human	genbank	57_37b	+1	reviewed	missense	c.1666	p.V556M	1.000	superfamily_Aconitase/3IPM_dehydase_swvl	superfamily_Aconitase_N,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase/3IPM_dehydase_swvl,HMMPfam_Aconitase_C	-	no_errors	
ACPP	55	genome.wustl.edu	37	3	132068766	132068766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	132068766	132068766	G	T	SNP	ACPP	NM_001134194	human	genbank	57_37b	+1	reviewed	missense	c.784	p.V262F	1.000	superfamily_SSF53254,HMMPfam_Acid_phosphat_A	superfamily_SSF53254,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,PatternScan_HIS_ACID_PHOSPHAT_2	-	no_errors	
ACSL6	23305	genome.wustl.edu	37	5	131325171	131325171	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	131325171	131325171	C	T	SNP	ACSL6	NM_001009185	human	genbank	57_37b	-1	validated	missense	c.481	p.G161R	1.000	superfamily_SSF56801,HMMPfam_AMP-binding	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
BAZ2A	11176	genome.wustl.edu	37	12	56998028	56998028	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56998028	56998028	T	-	DEL	BAZ2A	NM_013449	human	genbank	57_37b	-1	validated	frame_shift_del	c.3017	p.K1006fs	1.000	NULL	superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_AT_hook,HMMSmart_SM00384,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	(deletion:cds_exon[56998001,56998075])	no_errors	
BRIX1	55299	genome.wustl.edu	37	5	34924961	34924961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	34924961	34924961	G	A	SNP	BRIX1	NM_018321	human	genbank	57_37b	+1	validated	missense	c.673	p.E225K	1.000	HMMPfam_Brix	HMMPfam_Brix	-	no_errors	
BTBD1	53339	genome.wustl.edu	37	15	83710634	83710634	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	83710634	83710634	T	G	SNP	BTBD1	NM_025238	human	genbank	57_37b	-1	reviewed	silent	c.708	p.R236	1.000	HMMPfam_BACK	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_PHR	-	no_errors	
BTRC	8945	genome.wustl.edu	37	10	103295203	103295203	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103295203	103295203	G	C	SNP	BTRC	NM_033637	human	genbank	57_37b	+1	reviewed	silent	c.1440	p.V480	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
C12orf50	160419	genome.wustl.edu	37	12	88380150	88380150	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	88380150	88380150	C	T	SNP	C12orf50	NM_152589	human	genbank	57_37b	-1	predicted	silent	c.861	p.V287	1.000	NULL	NULL	-	no_errors	
C20orf132	140699	genome.wustl.edu	37	20	35748218	35748218	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35748218	35748218	C	G	SNP	C20orf132	ENST00000400441	human	ensembl	57_37b	-1	known	missense	c.2253	p.K751N	0.943	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
C5orf42	65250	genome.wustl.edu	37	5	37179528	37179528	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	37179528	37179528	C	A	SNP	C5orf42	NM_023073	human	genbank	57_37b	-1	predicted	missense	c.2395	p.V799F	0.000	NULL	NULL	-	no_errors	
CCDC45	90799	genome.wustl.edu	37	17	62517574	62517574	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62517574	62517574	C	G	SNP	CCDC45	NM_138363	human	genbank	57_37b	+1	provisional	missense	c.644	p.S215C	0.000	NULL	NULL	-	no_errors	
CYP3A7	1551	genome.wustl.edu	37	7	99314837	99314837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99314837	99314837	G	A	SNP	CYP3A7	NM_000765	human	genbank	57_37b	-1	reviewed	missense	c.484	p.R162W	0.006	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DDX56	54606	genome.wustl.edu	37	7	44606098	44606098	+	Silent	SNP	C	C	T	rs6656	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44606098	44606098	C	T	SNP	DDX56	NM_019082	human	genbank	57_37b	-1	reviewed	silent	c.1515	p.V505	0.003	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-		
DOPEY2	9980	genome.wustl.edu	37	21	37605126	37605126	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	37605126	37605126	C	G	SNP	DOPEY2	NM_005128	human	genbank	57_37b	+1	validated	missense	c.2375	p.S792C	0.000	NULL	HMMPfam_Dopey_N	-	no_errors	
DOPEY2	9980	genome.wustl.edu	37	21	37605200	37605200	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	37605200	37605200	C	G	SNP	DOPEY2	NM_005128	human	genbank	57_37b	+1	validated	missense	c.2449	p.L817V	0.763	NULL	HMMPfam_Dopey_N	-	no_errors	
ENSG00000221138	0	genome.wustl.edu	37	15	33256217	33256217	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	33256217	33256217	T	C	SNP	ENSG00000221138	ENST00000408211	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.007	-	-	-	no_errors	
ENSG00000236623	0	genome.wustl.edu	37	10	42391610	42391610	+	RNA	SNP	T	T	A	rs2127326	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42391610	42391610	T	A	SNP	ENSG00000236623	ENST00000423802	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-		
ESYT1	23344	genome.wustl.edu	37	12	56527640	56527640	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56527640	56527640	C	T	SNP	ESYT1	NM_015292	human	genbank	57_37b	+1	provisional	missense	c.1456	p.R486W	0.451	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
FAM187B	148109	genome.wustl.edu	37	19	35715792	35715792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35715792	35715792	G	A	SNP	FAM187B	NM_152481	human	genbank	57_37b	-1	provisional	missense	c.1046	p.A349V	0.000	NULL	NULL	-	no_errors	
FAM91A1	157769	genome.wustl.edu	37	8	124798772	124798772	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124798772	124798772	G	T	SNP	FAM91A1	NM_144963	human	genbank	57_37b	+1	validated	missense	c.1000	p.D334Y	1.000	NULL	PatternScan_PLANT_GLOBIN	-	no_errors	
FBN3	84467	genome.wustl.edu	37	19	8191401	8191401	+	Silent	SNP	G	G	A	rs3813778	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8191401	8191401	G	A	SNP	FBN3	NM_032447	human	genbank	57_37b	-1	reviewed	silent	c.2505	p.C835	0.940	superfamily_TB module/8-cys domain,HMMPfam_TB	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-		
FREM1	158326	genome.wustl.edu	37	9	14859403	14859403	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	14859403	14859403	T	C	SNP	FREM1	NM_144966	human	genbank	57_37b	-1	validated	missense	c.409	p.M137V	0.908	NULL	superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors	
GFRA3	2676	genome.wustl.edu	37	5	137599965	137599965	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	137599965	137599965	G	A	SNP	GFRA3	NM_001496	human	genbank	57_37b	-1	reviewed	missense	c.364	p.R122C	0.843	superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF	superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF	-	no_errors	
HOXA1	3198	genome.wustl.edu	37	7	27134950	27134950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27134950	27134950	G	A	SNP	HOXA1	NM_153620	human	genbank	57_37b	-1	reviewed	missense	c.379	p.R127C	0.950	NULL	NULL	-	no_errors	
ITPR3	3710	genome.wustl.edu	37	6	33639885	33639885	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33639885	33639885	C	G	SNP	ITPR3	NM_002224	human	genbank	57_37b	+1	validated	missense	c.2808	p.F936L	0.920	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR,HMMSmart_MIR,HMMPfam_MIR,superfamily_SSF100909,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
LOC100290265	0	genome.wustl.edu	37	6	3376647	3376647	+	Missense_Mutation	SNP	T	C	C	rs913532	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	3376647	3376647	T	C	SNP	LOC100290265	XM_002346746	human	genbank	57_37b	+1	model	missense	c.587	p.F196S	0.000	NULL	NULL	-		
MGAT4A	11320	genome.wustl.edu	37	2	99272904	99272904	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	99272904	99272904	G	A	SNP	MGAT4A	NM_012214	human	genbank	57_37b	-1	reviewed	silent	c.609	p.G203	0.449	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151891576	151891576	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151891576	151891576	C	A	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	nonsense	c.4456	p.E1486*	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
NXF1	10482	genome.wustl.edu	37	11	62562413	62562413	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62562413	62562413	T	C	SNP	NXF1	NM_006362	human	genbank	57_37b	-1	reviewed	missense	c.1571	p.N524S	1.000	superfamily_SSF54427,HMMPfam_NTF2	superfamily_SSF54928,HMMPfam_Tap-RNA_bind,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRcap,superfamily_SSF54427,HMMPfam_NTF2,superfamily_UBA_like,HMMSmart_TAP_C,HMMPfam_TAP_C	-	no_errors	
OR1K1	392392	genome.wustl.edu	37	9	125562550	125562550	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125562550	125562550	T	C	SNP	OR1K1	NM_080859	human	genbank	57_37b	+1	provisional	missense	c.149	p.I50T	0.389	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
PDPN	10630	genome.wustl.edu	37	1	13910417	13910417	+	Silent	SNP	C	C	T	rs355025	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13910417	13910417	C	T	SNP	PDPN	NM_006474	human	genbank	57_37b	+1	reviewed	silent	c.117	p.P39	0.013	NULL	HMMPfam_Podoplanin	-		
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
PPP2R3C	55012	genome.wustl.edu	37	14	35577392	35577392	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35577392	35577392	T	C	SNP	PPP2R3C	NM_017917	human	genbank	57_37b	-1	provisional	missense	c.455	p.Y152C	1.000	superfamily_EF-hand	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
RAB4B	53916	genome.wustl.edu	37	19	41286351	41286351	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41286351	41286351	T	A	SNP	RAB4B	NM_016154	human	genbank	57_37b	+1	validated	silent	c.159	p.G53	0.997	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors	
RRAGD	58528	genome.wustl.edu	37	6	90088968	90088968	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90088968	90088968	T	C	SNP	RRAGD	NM_021244	human	genbank	57_37b	-1	validated	missense	c.734	p.E245G	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA	-	no_errors	
SCARA3	51435	genome.wustl.edu	37	8	27528481	27528481	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	27528481	27528481	C	T	SNP	SCARA3	NM_016240	human	genbank	57_37b	+1	reviewed	silent	c.1434	p.G478	0.002	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors	
SCN10A	6336	genome.wustl.edu	37	3	38760181	38760181	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38760181	38760181	G	C	SNP	SCN10A	NM_006514	human	genbank	57_37b	-1	validated	missense	c.3644	p.T1215S	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors	
SLCO1B3	28234	genome.wustl.edu	37	12	21030801	21030801	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21030801	21030801	T	G	SNP	SLCO1B3	NM_019844	human	genbank	57_37b	+1	validated	missense	c.1066	p.F356V	0.032	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors	
SPRR2D	6703	genome.wustl.edu	37	1	153012797	153012797	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153012797	153012797	T	C	SNP	SPRR2D	NM_006945	human	genbank	57_37b	-1	validated	missense	c.26	p.K9R	1.000	NULL	NULL	-	no_errors	
TMEM150B	284417	genome.wustl.edu	37	19	55824332	55824332	+	Missense_Mutation	SNP	T	T	G	rs7246479	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55824332	55824332	T	G	SNP	TMEM150B	NM_001085488	human	genbank	57_37b	-1	provisional	missense	c.597	p.L199F	0.000	HMMPfam_Frag1	HMMPfam_Frag1	-		
TP53	7157	genome.wustl.edu	37	17	7578458	7578464	+	Frame_Shift_Del	DEL	GGACGCG	GGACGCG	-	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	GGACGCG	GGACGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578458	7578464	GGACGCG	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.472_466	p.R156fs	0.981:0.899:0.906:0.032:0.000:0.019:0.010	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578371,7578554])	no_errors	
TRAK2	66008	genome.wustl.edu	37	2	202272210	202272210	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	202272210	202272210	C	G	SNP	TRAK2	NM_015049	human	genbank	57_37b	-1	validated	missense	c.202	p.D68H	1.000	HMMPfam_HAP1_N	HMMPfam_HAP1_N	-	no_errors	
TTC15	51112	genome.wustl.edu	37	2	3392295	3392295	+	Missense_Mutation	SNP	A	G	G	rs11686212	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08P-01	TCGA-A8-A08P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	3392295	3392295	A	G	SNP	TTC15	NM_016030	human	genbank	57_37b	+1	validated	missense	c.901	p.S301G	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-		
VWF	7450	genome.wustl.edu	37	12	6172202	6172202	+	Missense_Mutation	SNP	T	T	C	rs1800378	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A08P-01	TCGA-A8-A08P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6172202	6172202	T	C	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	missense	c.1451	p.H484R	0.681	HMMSmart_SM00216,HMMPfam_VWD	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-		
WDR67	93594	genome.wustl.edu	37	8	124096492	124096494	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124096492	124096494	CTT	-	DEL	WDR67	NM_145647	human	genbank	57_37b	+1	validated	in_frame_del	c.431_433	p.S146in_frame_del	1.000:0.990:1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,superfamily_Ypt/Rab-GAP domain of gyp1p	(deletion:cds_exon[124096402,124096580])	no_errors	
ZNF831	128611	genome.wustl.edu	37	20	57768844	57768844	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08P-01	TCGA-A8-A08P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57768844	57768844	C	T	SNP	ZNF831	NM_178457	human	genbank	57_37b	+1	provisional	nonsense	c.2770	p.Q924*	0.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
