Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANGPTL2	23452	genome.wustl.edu	37	9	129870474	129870474	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	129870474	129870474	C	A	SNP	ANGPTL2	NM_012098	human	genbank	57_37b	-1	reviewed	silent	c.537	p.L179	1.000	NULL	superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
ATP11A	23250	genome.wustl.edu	37	13	113464932	113464932	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113464932	113464932	G	C	SNP	ATP11A	NM_032189	human	genbank	57_37b	+1	reviewed	splice_site	c.334-1	e5-1	1.000	-	-	-	no_errors	
ATXN10	25814	genome.wustl.edu	37	22	46098586	46098586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46098586	46098586	C	T	SNP	ATXN10	NM_013236	human	genbank	57_37b	+1	reviewed	missense	c.506	p.P169L	0.595	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_Atx10homo_assoc	-	no_errors	
B3GALTL	145173	genome.wustl.edu	37	13	31903712	31903712	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	31903712	31903712	C	T	SNP	B3GALTL	NM_194318	human	genbank	57_37b	+1	reviewed	silent	c.1404	p.I468	0.964	HMMPfam_Fringe	HMMPfam_Fringe,PatternScan_ER_TARGET	-	no_errors	
C6	729	genome.wustl.edu	37	5	41160256	41160256	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41160256	41160256	C	T	SNP	C6	NM_000065	human	genbank	57_37b	-1	reviewed	missense	c.1672	p.D558N	1.000	NULL	PatternScan_EGF_2,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN,PatternScan_EGF_1,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,HMMSmart_FIMAC,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors	
CLEC4G	339390	genome.wustl.edu	37	19	7795289	7795289	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7795289	7795289	C	G	SNP	CLEC4G	NM_198492	human	genbank	57_37b	-1	validated	missense	c.426	p.E142D	0.004	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
CNFN	84518	genome.wustl.edu	37	19	42891312	42891312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42891312	42891312	C	T	SNP	CNFN	NM_032488	human	genbank	57_37b	-1	validated	missense	c.332	p.R111Q	1.000	NULL	HMMPfam_PLAC8	-	no_errors	
COL5A3	50509	genome.wustl.edu	37	19	10084293	10084293	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10084293	10084293	G	A	SNP	COL5A3	NM_015719	human	genbank	57_37b	-1	reviewed	nonsense	c.3619	p.R1207*	1.000	HMMPfam_Collagen	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
CTAGE6	340307	genome.wustl.edu	37	7	143453578	143453578	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	143453578	143453578	G	C	SNP	CTAGE6	NM_178561	human	genbank	57_37b	-1	validated	missense	c.1174	p.Q392E	0.096	NULL	NULL	-	no_errors	
CTAGE9	0	genome.wustl.edu	37	6	132031833	132031833	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	132031833	132031833	C	T	SNP	CTAGE9	NM_001145659	human	genbank	57_37b	-1	provisional	missense	c.325	p.E109K	0.000	NULL	NULL	-	no_errors	
DPPA2	151871	genome.wustl.edu	37	3	109026960	109026960	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	109026960	109026960	C	T	SNP	DPPA2	NM_138815	human	genbank	57_37b	-1	validated	missense	c.577	p.A193T	0.972	NULL	HMMSmart_SAP	-	no_errors	
DST	667	genome.wustl.edu	37	6	56473226	56473226	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	56473226	56473226	C	T	SNP	DST	NM_020388	human	genbank	57_37b	-1	reviewed	missense	c.4589	p.R1530Q	1.000	superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_Spectrin,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin,PatternScan_RIBOSOMAL_L23	-	no_errors	
ENSG00000212558	0	genome.wustl.edu	37	2	10230359	10230359	+	RNA	SNP	A	A	G	rs60386224	byCluster;byFrequency;by1000genomes	TCGA-A8-A09B-01	TCGA-A8-A09B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	10230359	10230359	A	G	SNP	ENSG00000212558	ENST00000391256	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.002	-	-	-		
ENSG00000223468	0	genome.wustl.edu	37	6	46712024	46712024	+	Missense_Mutation	SNP	C	C	T	rs4457158	by2Hit2Allele	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46712024	46712024	C	T	SNP	ENSG00000223468	ENST00000412212	human	ensembl	57_37b	-1	known	missense	c.175	p.E59K	0.000	NULL	NULL	-		
ENSG00000245029	0	genome.wustl.edu	37	1	16889820	16889820	+	RNA	SNP	C	C	T	rs78775795	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16889820	16889820	C	T	SNP	ENSG00000245029	ENST00000500210	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.025	-	-	-		
ERAL1	26284	genome.wustl.edu	37	17	27185468	27185468	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27185468	27185468	G	A	SNP	ERAL1	NM_005702	human	genbank	57_37b	+1	provisional	silent	c.675	p.K225	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1,superfamily_Prokaryotic type KH domain (KH-domain type II)	-	no_errors	
ESPL1	9700	genome.wustl.edu	37	12	53684751	53684751	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53684751	53684751	T	-	DEL	ESPL1	NM_012291	human	genbank	57_37b	+1	validated	frame_shift_del	c.5491	p.W1831fs	1.000	HMMPfam_Peptidase_C50	HMMPfam_Peptidase_C50	(deletion:cds_exon[53684625,53684780])	no_errors	
FAM81A	145773	genome.wustl.edu	37	15	59784566	59784566	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	59784566	59784566	G	A	SNP	FAM81A	NM_152450	human	genbank	57_37b	+1	validated	missense	c.391	p.D131N	1.000	NULL	NULL	-	no_errors	
GPC5	2262	genome.wustl.edu	37	13	93518661	93518661	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	93518661	93518661	G	T	SNP	GPC5	NM_004466	human	genbank	57_37b	+1	reviewed	missense	c.1688	p.S563I	0.140	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors	
HUNK	30811	genome.wustl.edu	37	21	33331189	33331189	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33331189	33331189	C	T	SNP	HUNK	NM_014586	human	genbank	57_37b	+1	validated	silent	c.781	p.L261	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ITIH5L	347365	genome.wustl.edu	37	X	54777709	54777709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54777709	54777709	G	A	SNP	ITIH5L	NM_198510	human	genbank	57_37b	-1	reviewed	missense	c.3457	p.R1153W	0.000	HMMPfam_ITI_HC_C	HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors	
ITPR1	3708	genome.wustl.edu	37	3	4853138	4853138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	4853138	4853138	G	A	SNP	ITPR1	NM_001099952	human	genbank	57_37b	+1	reviewed	missense	c.7318	p.V2440I	0.051	HMMPfam_Ion_trans	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
KIAA1529	57653	genome.wustl.edu	37	9	100070026	100070026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100070026	100070026	C	T	SNP	KIAA1529	NM_020893	human	genbank	57_37b	+1	predicted	missense	c.406	p.R136W	0.000	NULL	NULL	-	no_errors	
LTBP4	8425	genome.wustl.edu	37	19	41123021	41123021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41123021	41123021	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	57_37b	+1	known	missense	c.3161	p.R1054Q	1.000	HMMPfam_EGF_CA,superfamily_SSF57196	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,superfamily_Fibril-assoc,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Grow_fac_recept	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56160761	56160761	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56160761	56160761	G	A	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	silent	c.1035	p.Q345	1.000	HMMPfam_SWIM	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56161795	56161795	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56161795	56161795	C	A	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.1292	p.S431*	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors	
MLL2	8085	genome.wustl.edu	37	12	49444769	49444769	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49444769	49444769	G	C	SNP	MLL2	NM_003482	human	genbank	57_37b	-1	validated	silent	c.2697	p.A899	0.896	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMSmart_SM00184,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_RECOMBINASES_2,HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
NCRNA00032	158035	genome.wustl.edu	37	9	27261826	27261826	+	Splice_Site	SNP	A	G	G	rs911597	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A09B-01	TCGA-A8-A09B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	27261826	27261826	A	G	SNP	NCRNA00032	NR_026679	human	genbank	57_37b	-1	predicted	splice_site	c.NULL	NULL	0.334	-	-	-		
NOBOX	135935	genome.wustl.edu	37	7	144107279	144107279	+	Silent	SNP	A	A	G	rs1208179	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A8-A09B-01	TCGA-A8-A09B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	144107279	144107279	A	G	SNP	NOBOX	NM_001080413	human	genbank	57_37b	-1	provisional	silent	c.42	p.G14	0.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-		
PCDHA8	56140	genome.wustl.edu	37	5	140223030	140223030	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140223030	140223030	C	T	SNP	PCDHA8	NM_018911	human	genbank	57_37b	+1	reviewed	silent	c.2124	p.S708	0.998	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHB1	29930	genome.wustl.edu	37	5	140433373	140433373	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140433373	140433373	G	A	SNP	PCDHB1	NM_013340	human	genbank	57_37b	+1	reviewed	missense	c.2318	p.R773H	0.993	NULL	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178928060	178928086	+	In_Frame_Del	DEL	GCCAGTACCTCATGGATTAGAAGATTT	GCCAGTACCTCATGGATTAGAAGATTT	-	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	GCCAGTACCTCATGGATTAGAAGATTT	GCCAGTACCTCATGGATTAGAAGATTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178928060	178928086	GCCAGTACCTCATGGATTAGAAGATTT	-	DEL	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1338_1364	p.PVPHGLEDL447in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.984:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:0.998:1.000	superfamily_C2_CaLB,HMMPfam_PI3K_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	(deletion:cds_exon[178927974,178928126])	no_errors	
PNMAL2	0	genome.wustl.edu	37	19	46997306	46997306	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46997306	46997306	C	T	SNP	PNMAL2	NM_020709	human	genbank	57_37b	-1	validated	missense	c.1417	p.E473K	0.001	NULL	NULL	-	no_errors	
RAB40B	10966	genome.wustl.edu	37	17	80615975	80615975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80615975	80615975	C	T	SNP	RAB40B	NM_006822	human	genbank	57_37b	-1	reviewed	missense	c.601	p.V201M	1.000	HMMSmart_SOCS,HMMPfam_SOCS_box	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,HMMSmart_SOCS,HMMPfam_SOCS_box	-	no_errors	
RIPK1	8737	genome.wustl.edu	37	6	3081257	3081257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	3081257	3081257	C	T	SNP	RIPK1	NM_003804	human	genbank	57_37b	+1	validated	silent	c.366	p.I122	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors	
RPL22	6146	genome.wustl.edu	37	1	6246831	6246831	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6246831	6246831	T	G	SNP	RPL22	NM_000983	human	genbank	57_37b	-1	reviewed	silent	c.288	p.L96	0.002	HMMPfam_Ribosomal_L22e	HMMPfam_Ribosomal_L22e	-	no_errors	
RYR1	6261	genome.wustl.edu	37	19	38948842	38948842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38948842	38948842	C	T	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	missense	c.2077	p.P693S	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SHANK1	50944	genome.wustl.edu	37	19	51192217	51192217	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51192217	51192217	G	A	SNP	SHANK1	NM_016148	human	genbank	57_37b	-1	validated	missense	c.2056	p.P686S	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
SP4	6671	genome.wustl.edu	37	7	21469678	21469678	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21469678	21469678	C	A	SNP	SP4	NM_003112	human	genbank	57_37b	+1	validated	missense	c.895	p.Q299K	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
TCF7L2	6934	genome.wustl.edu	37	10	114849277	114849277	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	114849277	114849277	T	C	SNP	TCF7L2	ENST00000355717	human	ensembl	57_37b	+1	known	missense	c.212	p.V71A	1.000	HMMPfam_CTNNB1_binding	HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
TIGD6	81789	genome.wustl.edu	37	5	149375596	149375596	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149375596	149375596	G	C	SNP	TIGD6	NM_030953	human	genbank	57_37b	-1	validated	missense	c.316	p.L106V	0.998	superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE	-	no_errors	
TNRC6B	23112	genome.wustl.edu	37	22	40669427	40669428	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40669427	40669428	-	T	INS	TNRC6B	NM_015088	human	genbank	57_37b	+1	validated	splice_site_ins	c.2807-2_2807-1	e6-1	1.000:1.000	-	-	-	no_errors	
TRPC5	7224	genome.wustl.edu	37	X	111095568	111095568	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	111095568	111095568	G	C	SNP	TRPC5	NM_012471	human	genbank	57_37b	-1	validated	silent	c.1335	p.L445	1.000	HMMPfam_Ion_trans	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1	-	no_errors	
UBE2Q2	92912	genome.wustl.edu	37	15	76146749	76146749	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09B-01	TCGA-A8-A09B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	76146749	76146749	C	T	SNP	UBE2Q2	NM_173469	human	genbank	57_37b	+1	validated	missense	c.203	p.P68L	1.000	superfamily_UBC-like	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors	
