Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADH1A	124	genome.wustl.edu	37	4	100205585	100205585	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100205585	100205585	C	G	SNP	ADH1A	NM_000667	human	genbank	57_37b	-1	reviewed	missense	c.538	p.G180R	1.000	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_GroES-like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	-	no_errors	
AMMECR1	9949	genome.wustl.edu	37	X	109507722	109507738	+	Frame_Shift_Del	DEL	AAGTGTGTACTCCCTGA	AAGTGTGTACTCCCTGA	-	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	AAGTGTGTACTCCCTGA	AAGTGTGTACTCCCTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	109507722	109507738	AAGTGTGTACTCCCTGA	-	DEL	AMMECR1	NM_015365	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.579_563	p.L188fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_AMMECR1	HMMPfam_AMMECR1	(deletion:cds_exon[109507717,109507827])	no_errors	
ARG1	383	genome.wustl.edu	37	6	131900390	131900390	+	Silent	SNP	C	C	T	rs34504481	byCluster;by1000genomes	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131900390	131900390	C	T	SNP	ARG1	NM_000045	human	genbank	57_37b	+1	reviewed	silent	c.270	p.N90	0.000	HMMPfam_Arginase,superfamily_Arginase/deacetylase	HMMPfam_Arginase,superfamily_Arginase/deacetylase,PatternScan_ARGINASE_1,PatternScan_ARGINASE_2,PatternScan_ARGINASE_3	-		
ATP6V0A2	23545	genome.wustl.edu	37	12	124229203	124229203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124229203	124229203	G	A	SNP	ATP6V0A2	NM_012463	human	genbank	57_37b	+1	reviewed	silent	c.1386	p.V462	0.999	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors	
CDH1	999	genome.wustl.edu	37	16	68857485	68857485	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68857485	68857485	T	-	DEL	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2120	p.P708fs	0.048	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	(deletion:cds_exon[68857302,68857529])	no_errors	
CLMN	79789	genome.wustl.edu	37	14	95688048	95688048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95688048	95688048	T	C	SNP	CLMN	NM_024734	human	genbank	57_37b	-1	validated	missense	c.304	p.K102E	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2	-	no_errors	
DACT1	51339	genome.wustl.edu	37	14	59113588	59113588	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	59113588	59113588	C	T	SNP	DACT1	NM_016651	human	genbank	57_37b	+1	validated	silent	c.2247	p.Y749	1.000	NULL	NULL	-	no_errors	
DOCK11	139818	genome.wustl.edu	37	X	117752580	117752580	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	117752580	117752580	G	C	SNP	DOCK11	NM_144658	human	genbank	57_37b	+1	validated	silent	c.3360	p.L1120	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto	-	no_errors	
FAAH	2166	genome.wustl.edu	37	1	46871162	46871162	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46871162	46871162	C	T	SNP	FAAH	NM_001441	human	genbank	57_37b	+1	reviewed	missense	c.563	p.P188L	0.999	superfamily_Amidase_sig_enz,HMMPfam_Amidase	superfamily_Amidase_sig_enz,HMMPfam_Amidase,PatternScan_AMIDASES	-	no_errors	
FAAH	2166	genome.wustl.edu	37	1	46874199	46874199	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46874199	46874199	G	C	SNP	FAAH	NM_001441	human	genbank	57_37b	+1	reviewed	silent	c.1020	p.P340	0.011	HMMPfam_Amidase,superfamily_Amidase_sig_enz	HMMPfam_Amidase,superfamily_Amidase_sig_enz,PatternScan_AMIDASES	-	no_errors	
FAM199X	0	genome.wustl.edu	37	X	103430808	103430808	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103430808	103430808	C	T	SNP	FAM199X	NM_207318	human	genbank	57_37b	+1	validated	missense	c.479	p.P160L	1.000	NULL	NULL	-	no_errors	
FLG	2312	genome.wustl.edu	37	1	152277116	152277116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152277116	152277116	C	T	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.10246	p.E3416K	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
LAMA5	3911	genome.wustl.edu	37	20	60887020	60887020	+	Silent	SNP	G	G	A	rs114698761	by1000genomes	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60887020	60887020	G	A	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	silent	c.9591	p.A3197	0.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-		
LOC728643	728643	genome.wustl.edu	37	10	47133818	47133818	+	RNA	SNP	G	G	A	rs4979737	byCluster;byFrequency;by2Hit2Allele	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	47133818	47133818	G	A	SNP	LOC728643	NR_003277	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.996	-	-	-		
MBD6	114785	genome.wustl.edu	37	12	57922155	57922155	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57922155	57922155	C	T	SNP	MBD6	NM_052897	human	genbank	57_37b	+1	validated	nonsense	c.2632	p.R878*	1.000	NULL	HMMPfam_MBD	-	no_errors	
MIR520A	0	genome.wustl.edu	37	19	54194212	54194212	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54194212	54194212	G	A	SNP	MIR520A	ENST00000384862	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	
MMS19	64210	genome.wustl.edu	37	10	99223754	99223754	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99223754	99223754	T	A	SNP	MMS19	NM_022362	human	genbank	57_37b	-1	validated	missense	c.1773	p.Q591H	0.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_PEROXIDASE_1,HMMPfam_HEAT	-	no_errors	
NDFIP1	80762	genome.wustl.edu	37	5	141515313	141515313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141515313	141515313	C	T	SNP	NDFIP1	NM_030571	human	genbank	57_37b	+1	reviewed	missense	c.301	p.R101W	0.988	HMMPfam_DUF2370	HMMPfam_DUF2370	-	no_errors	
NR2E1	7101	genome.wustl.edu	37	6	108492770	108492770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	108492770	108492770	G	A	SNP	NR2E1	NM_003269	human	genbank	57_37b	+1	validated	missense	c.134	p.R45Q	1.000	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
OTOF	9381	genome.wustl.edu	37	2	26700700	26700700	+	Missense_Mutation	SNP	G	G	A	rs4665855	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26700700	26700700	G	A	SNP	OTOF	NM_194322	human	genbank	57_37b	-1	reviewed	missense	c.62	p.P21L	0.006	NULL	HMMPfam_FerB,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-		
PDZD2	23037	genome.wustl.edu	37	5	31799549	31799549	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	31799549	31799549	A	G	SNP	PDZD2	NM_178140	human	genbank	57_37b	+1	reviewed	missense	c.194	p.E65G	0.824	superfamily_PDZ domain-like	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
PNLIPRP1	5407	genome.wustl.edu	37	10	118354350	118354350	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118354350	118354350	G	A	SNP	PNLIPRP1	NM_006229	human	genbank	57_37b	+1	provisional	missense	c.439	p.V147M	1.000	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors	
POTEA	340441	genome.wustl.edu	37	8	43197031	43197031	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	43197031	43197031	G	T	SNP	POTEA	NM_001005365	human	genbank	57_37b	+1	provisional	missense	c.1197	p.K399N	0.522	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
PSEN2	5664	genome.wustl.edu	37	1	227077759	227077759	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	227077759	227077759	A	G	SNP	PSEN2	NM_000447	human	genbank	57_37b	+1	reviewed	missense	c.811	p.K271E	1.000	HMMPfam_Presenilin,HMMSmart_SM00730	HMMPfam_Presenilin,HMMSmart_SM00730	-	no_errors	
SLC41A2	84102	genome.wustl.edu	37	12	105322236	105322236	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	105322236	105322236	C	T	SNP	SLC41A2	NM_032148	human	genbank	57_37b	-1	validated	missense	c.70	p.V24I	1.000	NULL	HMMPfam_MgtE	-	no_errors	
SLC9A7	84679	genome.wustl.edu	37	X	46618330	46618330	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	46618330	46618330	C	A	SNP	SLC9A7	NM_032591	human	genbank	57_37b	-1	reviewed	silent	c.135	p.G45	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors	
SRD5A2	6716	genome.wustl.edu	37	2	31754431	31754432	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	31754431	31754432	-	C	INS	SRD5A2	ENST00000233139	human	ensembl	57_37b	-1	known	frame_shift_ins	c.641_640	p.A214fs	0.991:0.955	HMMPfam_Steroid_dh	HMMPfam_Steroid_dh	-	no_errors	
TPD52	7163	genome.wustl.edu	37	8	80992644	80992644	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	80992644	80992644	C	T	SNP	TPD52	NM_001025252	human	genbank	57_37b	-1	validated	silent	c.45	p.P15	0.059	NULL	HMMPfam_TPD52	-	no_errors	
TSC22D1	8848	genome.wustl.edu	37	13	45148149	45148149	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45148149	45148149	G	A	SNP	TSC22D1	NM_183422	human	genbank	57_37b	-1	validated	nonsense	c.2062	p.Q688*	1.000	NULL	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors	
TUBBP5	0	genome.wustl.edu	37	9	141071078	141071078	+	Missense_Mutation	SNP	A	A	G	rs71634627	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	141071078	141071078	A	G	SNP	TUBBP5	ENST00000290377	human	ensembl	57_37b	+1	known	missense	c.481	p.M161V	1.000	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-		
ULK1	8408	genome.wustl.edu	37	12	132401566	132401566	+	Missense_Mutation	SNP	C	C	T	rs11546871	byCluster;by1000genomes	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	132401566	132401566	C	T	SNP	ULK1	NM_003565	human	genbank	57_37b	+1	validated	missense	c.2141	p.P714L	0.354	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-		
WBSCR17	64409	genome.wustl.edu	37	7	70597969	70597969	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	70597969	70597969	G	T	SNP	WBSCR17	NM_022479	human	genbank	57_37b	+1	reviewed	missense	c.181	p.D61Y	1.000	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors	
ZMIZ1	57178	genome.wustl.edu	37	10	81053147	81053147	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	81053147	81053147	A	C	SNP	ZMIZ1	NM_020338	human	genbank	57_37b	+1	validated	missense	c.967	p.T323P	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors	
ZNF613	79898	genome.wustl.edu	37	19	52448195	52448195	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J8-01	TCGA-AO-A0J8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52448195	52448195	C	T	SNP	ZNF613	NM_001031721	human	genbank	57_37b	+1	validated	silent	c.1059	p.F353	0.998	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
