Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACCN1	40	genome.wustl.edu	37	17	31618732	31618732	+	Silent	SNP	A	A	G	rs9893935	byCluster;by2Hit2Allele;by1000genomes	TCGA-AO-A125-01	TCGA-AO-A125-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	31618732	31618732	A	G	SNP	ACCN1	NM_183377	human	genbank	57_37b	-1	reviewed	silent	c.402	p.T134	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-		
ACTN2	88	genome.wustl.edu	37	1	236894614	236894614	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236894614	236894614	G	T	SNP	ACTN2	NM_001103	human	genbank	57_37b	+1	reviewed	missense	c.697	p.D233Y	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,HMMPfam_efhand_Ca_insen	-	no_errors	
ATCAY	85300	genome.wustl.edu	37	19	3908273	3908273	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3908273	3908273	C	T	SNP	ATCAY	NM_033064	human	genbank	57_37b	+1	reviewed	silent	c.552	p.Y184	0.998	superfamily_CRAL/TRIO domain,HMMSmart_SM00516	superfamily_CRAL/TRIO domain,HMMSmart_SM00516	-	no_errors	
BAI2	576	genome.wustl.edu	37	1	32210310	32210310	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32210310	32210310	C	T	SNP	BAI2	NM_001703	human	genbank	57_37b	-1	reviewed	silent	c.861	p.P287	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors	
BCAN	63827	genome.wustl.edu	37	1	156622582	156622582	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156622582	156622582	A	G	SNP	BCAN	NM_021948	human	genbank	57_37b	+1	validated	missense	c.1840	p.N614D	0.689	NULL	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406,PatternScan_IG_MHC,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
C3orf23	285343	genome.wustl.edu	37	3	44441887	44441887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44441887	44441887	G	A	SNP	C3orf23	NM_173826	human	genbank	57_37b	+1	validated	missense	c.926	p.R309K	0.893	NULL	NULL	-	no_errors	
CACNA1H	8912	genome.wustl.edu	37	16	1269003	1269003	+	Missense_Mutation	SNP	A	A	G	rs3751886	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AO-A125-01	TCGA-AO-A125-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1269003	1269003	A	G	SNP	CACNA1H	NM_021098	human	genbank	57_37b	+1	reviewed	missense	c.5921	p.E1974G	0.003	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-		
CCT3	7203	genome.wustl.edu	37	1	156305652	156305652	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156305652	156305652	C	G	SNP	CCT3	NM_005998	human	genbank	57_37b	-1	reviewed	missense	c.59	p.R20T	1.000	superfamily_GroEL-ATPase	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_SSF54849,superfamily_SSF52029	-	no_errors	
CDH10	1008	genome.wustl.edu	37	5	24535931	24535931	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	24535931	24535931	C	-	DEL	CDH10	NM_006727	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.527	p.G176fs	1.000	superfamily_Cadherin,HMMPfam_Cadherin	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	(deletion:cds_exon[24535812,24535931])	no_errors	
CDX4	1046	genome.wustl.edu	37	X	72674300	72674300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	72674300	72674300	C	T	SNP	CDX4	NM_005193	human	genbank	57_37b	+1	provisional	missense	c.734	p.S245L	0.984	superfamily_Homeodomain-like	HMMPfam_Caudal_act,PatternScan_HMG_COA_REDUCTASE_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
CSMD1	64478	genome.wustl.edu	37	8	3855433	3855433	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	3855433	3855433	T	C	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	silent	c.810	p.P270	0.009	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
EARS2	124454	genome.wustl.edu	37	16	23535677	23535677	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23535677	23535677	C	T	SNP	EARS2	NR_003501	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
ECM2	1842	genome.wustl.edu	37	9	95277299	95277301	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95277299	95277301	TCT	-	DEL	ECM2	NM_001393	human	genbank	57_37b	-1	reviewed	in_frame_del	c.668_666	p.E222in_frame_del	0.015:0.011:0.071	NULL	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_SSF52058,HMMPfam_LRR_1	(deletion:cds_exon[95276913,95277485])	no_errors	
EGLN2	112398	genome.wustl.edu	37	19	41307170	41307170	+	Silent	SNP	G	G	A	rs2545763	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41307170	41307170	G	A	SNP	EGLN2	NM_053046	human	genbank	57_37b	+1	reviewed	silent	c.693	p.P231	0.205	HMMSmart_SM00702	HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-		
ENSG00000205307	0	genome.wustl.edu	37	7	100170189	100170189	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100170189	100170189	C	T	SNP	ENSG00000205307	ENST00000342773	human	ensembl	57_37b	-1	known	missense	c.321	p.M107I	0.187	NULL	NULL	-	no_errors	
FASN	2194	genome.wustl.edu	37	17	80054315	80054315	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80054315	80054315	C	G	SNP	FASN	NM_004104	human	genbank	57_37b	-1	reviewed	missense	c.7	p.E3Q	1.000	superfamily_Thiolase-like,HMMPfam_ketoacyl-synt	superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C,superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12,superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N,HMMPfam_adh_short,superfamily_ACP-like,HMMPfam_PP-binding,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases,HMMPfam_Thioesterase	-	no_errors	
FCRL3	115352	genome.wustl.edu	37	1	157667171	157667171	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157667171	157667171	G	T	SNP	FCRL3	NM_052939	human	genbank	57_37b	-1	reviewed	silent	c.603	p.P201	0.002	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,PatternScan_N6_MTASE,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
FHAD1	114827	genome.wustl.edu	37	1	15694118	15694118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15694118	15694118	G	A	SNP	FHAD1	NM_052929	human	genbank	57_37b	+1	provisional	missense	c.3248	p.R1083K	1.000	NULL	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA	-	no_errors	
HK3	3101	genome.wustl.edu	37	5	176308376	176308376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176308376	176308376	G	A	SNP	HK3	NM_002115	human	genbank	57_37b	-1	reviewed	missense	c.2554	p.R852W	1.000	HMMPfam_Hexokinase_2,superfamily_SSF53067	superfamily_SSF53067,HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES	-	no_errors	
HYDIN	54768	genome.wustl.edu	37	16	71008518	71008518	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71008518	71008518	G	A	SNP	HYDIN	NM_032821	human	genbank	57_37b	-1	validated	nonsense	c.4825	p.R1609*	0.048	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
IGHD	0	genome.wustl.edu	37	14	106306841	106306841	+	Silent	SNP	C	C	T	rs709589	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	106306841	106306841	C	T	SNP	IGHD	ENST00000390556	human	ensembl	57_37b	-1	known	silent	c.987	p.P329	0.001	superfamily_Immunoglobulin,HMMSmart_SM00407,HMMPfam_C1-set	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_ig	-		
IL17RA	23765	genome.wustl.edu	37	22	17577966	17577966	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17577966	17577966	G	A	SNP	IL17RA	NM_014339	human	genbank	57_37b	+1	reviewed	silent	c.153	p.T51	0.009	NULL	HMMPfam_SEFIR	-	no_errors	
IREB2	3658	genome.wustl.edu	37	15	78758680	78758680	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78758680	78758680	A	G	SNP	IREB2	NM_004136	human	genbank	57_37b	+1	validated	missense	c.478	p.K160E	0.004	superfamily_Aconitase iron-sulfur domain	superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase,HMMPfam_Aconitase_C	-	no_errors	
JAK2	3717	genome.wustl.edu	37	9	5077523	5077523	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5077523	5077523	A	-	DEL	JAK2	NM_004972	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1935	p.N646fs	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[5077453,5077580])	no_errors	
KCTD14	65987	genome.wustl.edu	37	11	77734209	77734209	+	Silent	SNP	T	T	C	rs11237362	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A125-01	TCGA-AO-A125-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77734209	77734209	T	C	SNP	KCTD14	NM_023930	human	genbank	57_37b	-1	validated	silent	c.87	p.P29	0.005	NULL	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra	-		
KIF26B	55083	genome.wustl.edu	37	1	245861431	245861431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245861431	245861431	C	T	SNP	KIF26B	NM_018012	human	genbank	57_37b	+1	provisional	missense	c.5848	p.P1950S	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	-	no_errors	
LOC100287304	0	genome.wustl.edu	37	6	106553787	106553787	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	106553787	106553787	C	T	SNP	LOC100287304	XM_002342660	human	genbank	57_37b	-1	model	missense	c.638	p.R213Q	0.932	NULL	NULL	-	no_errors	
LOC388946	388946	genome.wustl.edu	37	2	46707851	46707851	+	Missense_Mutation	SNP	G	G	A	rs61995902	byCluster;by1000genomes	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	46707851	46707851	G	A	SNP	LOC388946	NM_001145051	human	genbank	57_37b	+1	validated	missense	c.425	p.R142Q	1.000	NULL	NULL	-		
LOC442421	442421	genome.wustl.edu	37	9	66499770	66499770	+	RNA	SNP	G	G	T	rs75046133	byFrequency	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	66499770	66499770	G	T	SNP	LOC442421	NR_024496	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
LOC643677	643677	genome.wustl.edu	37	13	103382805	103382805	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103382805	103382805	T	-	DEL	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	frame_shift_del	c.19786	p.R6596fs	0.000	NULL	NULL	(deletion:cds_exon[103381801,103389777])	no_errors	
LYPLA2P1	653639	genome.wustl.edu	37	6	33333916	33333916	+	RNA	SNP	G	G	T	rs116406518	byCluster;by1000genomes	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33333916	33333916	G	T	SNP	LYPLA2P1	NR_001444	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	1.000	-	-	-		
MLL3	58508	genome.wustl.edu	37	7	151880094	151880094	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151880094	151880094	C	A	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	nonsense	c.5230	p.E1744*	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MRPL45	84311	genome.wustl.edu	37	17	36453190	36453190	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36453190	36453190	G	C	SNP	MRPL45	NM_032351	human	genbank	57_37b	+1	reviewed	missense	c.41	p.R14T	0.616	NULL	HMMPfam_Tim44	-	no_errors	
OTOP1	133060	genome.wustl.edu	37	4	4199797	4199797	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	4199797	4199797	G	A	SNP	OTOP1	NM_177998	human	genbank	57_37b	-1	provisional	missense	c.764	p.T255M	0.710	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors	
PCDHA6	56142	genome.wustl.edu	37	5	140208763	140208763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140208763	140208763	G	A	SNP	PCDHA6	NM_018909	human	genbank	57_37b	+1	reviewed	missense	c.1087	p.A363T	0.909	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PHKA2	5256	genome.wustl.edu	37	X	18969226	18969226	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18969226	18969226	G	T	SNP	PHKA2	NM_000292	human	genbank	57_37b	-1	reviewed	silent	c.450	p.A150	0.966	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
PRKD2	25865	genome.wustl.edu	37	19	47207835	47207835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47207835	47207835	G	A	SNP	PRKD2	NM_001079880	human	genbank	57_37b	-1	reviewed	missense	c.583	p.R195C	1.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PRPSAP2	5636	genome.wustl.edu	37	17	18785979	18785979	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18785979	18785979	C	T	SNP	PRPSAP2	NM_002767	human	genbank	57_37b	+1	reviewed	nonsense	c.511	p.Q171*	1.000	superfamily_SSF53271	superfamily_SSF53271,HMMPfam_RelB,HMMPfam_Pribosyltran	-	no_errors	
RASGRF2	5924	genome.wustl.edu	37	5	80390150	80390150	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	80390150	80390150	G	A	SNP	RASGRF2	NM_006909	human	genbank	57_37b	+1	validated	silent	c.1587	p.L529	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors	
SAMD1	90378	genome.wustl.edu	37	19	14200113	14200115	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14200113	14200115	TCT	-	DEL	SAMD1	NM_138352	human	genbank	57_37b	-1	provisional	in_frame_del	c.698_696	p.E232in_frame_del	0.056:0.048:0.014	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	(deletion:cds_exon[14199880,14200174])	no_errors	
SLC39A6	25800	genome.wustl.edu	37	18	33706858	33706858	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	33706858	33706858	G	C	SNP	SLC39A6	NM_012319	human	genbank	57_37b	-1	validated	missense	c.113	p.P38R	0.010	NULL	HMMPfam_Zip	-	no_errors	
TEX15	56154	genome.wustl.edu	37	8	30701516	30701516	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A125-01	TCGA-AO-A125-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	30701516	30701516	T	A	SNP	TEX15	NM_031271	human	genbank	57_37b	-1	validated	missense	c.5018	p.N1673I	0.817	NULL	NULL	-	no_errors	
