Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS14	140766	genome.wustl.edu	37	10	72503850	72503850	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72503850	72503850	C	T	SNP	ADAMTS14	NM_139155	human	genbank	57_37b	+1	reviewed	missense	c.2096	p.S699F	1.000	NULL	HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	-	no_errors	
ALMS1	7840	genome.wustl.edu	37	2	73675332	73675332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73675332	73675332	C	T	SNP	ALMS1	NM_015120	human	genbank	57_37b	+1	reviewed	missense	c.1675	p.P559S	0.000	NULL	NULL	-	no_errors	
ANO5	203859	genome.wustl.edu	37	11	22294371	22294371	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	22294371	22294371	C	A	SNP	ANO5	NM_213599	human	genbank	57_37b	+1	reviewed	missense	c.2071	p.P691T	1.000	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors	
ANP32E	81611	genome.wustl.edu	37	1	150202960	150202960	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150202960	150202960	G	C	SNP	ANP32E	NM_030920	human	genbank	57_37b	-1	validated	silent	c.273	p.T91	0.996	superfamily_L domain-like,HMMPfam_LRR_1	superfamily_L domain-like,HMMPfam_LRR_1	-	no_errors	
AQP12A	375318	genome.wustl.edu	37	2	241631442	241631442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241631442	241631442	G	A	SNP	AQP12A	NM_198998	human	genbank	57_37b	+1	provisional	missense	c.112	p.A38T	0.021	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors	
ATP1A2	477	genome.wustl.edu	37	1	160098503	160098503	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160098503	160098503	A	G	SNP	ATP1A2	NM_000702	human	genbank	57_37b	+1	reviewed	missense	c.1079	p.E360G	1.000	superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF56784	HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors	
BZW1	9689	genome.wustl.edu	37	2	201683608	201683608	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	201683608	201683608	C	G	SNP	BZW1	ENST00000452790	human	ensembl	57_37b	+1	known	missense	c.1046	p.A349G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMSmart_eIF5C,HMMPfam_W2	-	no_errors	
CLIP2	7461	genome.wustl.edu	37	7	73803543	73803544	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73803543	73803544	-	G	INS	CLIP2	NM_003388	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.2674_2675	p.S892fs	1.000:0.998	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors	
CLIP2	7461	genome.wustl.edu	37	7	73803546	73803547	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73803546	73803547	-	T	INS	CLIP2	NM_003388	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.2677_2678	p.G893fs	1.000:1.000	NULL	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain	-	no_errors	
CRY2	1408	genome.wustl.edu	37	11	45880386	45880386	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	45880386	45880386	A	T	SNP	CRY2	NM_021117	human	genbank	57_37b	+1	validated	silent	c.492	p.V164	1.000	superfamily_DNA_photolyase_N,HMMPfam_DNA_photolyase	superfamily_DNA_photolyase_N,HMMPfam_DNA_photolyase,superfamily_Photolyase_FAD-bd/Cryptochr_C,HMMPfam_FAD_binding_7	-	no_errors	
CXorf64	0	genome.wustl.edu	37	X	125955269	125955269	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	125955269	125955269	G	T	SNP	CXorf64	NM_001122716	human	genbank	57_37b	+1	predicted	missense	c.648	p.R216S	0.000	NULL	NULL	-	no_errors	
CYP7B1	9420	genome.wustl.edu	37	8	65528565	65528565	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	65528565	65528565	G	T	SNP	CYP7B1	NM_004820	human	genbank	57_37b	-1	reviewed	missense	c.533	p.A178E	0.000	superfamily_Cytochrome P450	superfamily_Cytochrome P450,HMMPfam_p450	-	no_errors	
DCHS2	54798	genome.wustl.edu	37	4	155160373	155160373	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	155160373	155160373	A	C	SNP	DCHS2	NM_017639	human	genbank	57_37b	-1	validated	missense	c.6076	p.S2026A	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors	
DNAH17	8632	genome.wustl.edu	37	17	76421453	76421454	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76421453	76421454	-	C	INS	DNAH17	ENST00000389840	human	ensembl	57_37b	-1	known	frame_shift_ins	c.13184_13183	p.S4395fs	1.000:0.156	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors	
ENSG00000173213	0	genome.wustl.edu	37	18	47738	47738	+	Silent	SNP	T	T	C	rs4081432	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47738	47738	T	C	SNP	ENSG00000173213	ENST00000308911	human	ensembl	57_37b	-1	known	silent	c.987	p.Q329	1.000	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-		
ERMP1	79956	genome.wustl.edu	37	9	5805716	5805716	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5805716	5805716	C	A	SNP	ERMP1	NM_024896	human	genbank	57_37b	-1	validated	missense	c.1618	p.V540F	0.012	NULL	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28	-	no_errors	
FLJ46321	389763	genome.wustl.edu	37	9	84607639	84607639	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	84607639	84607639	T	A	SNP	FLJ46321	NM_001001670	human	genbank	57_37b	+1	validated	missense	c.2254	p.F752I	0.000	NULL	NULL	-	no_errors	
FOXP4	116113	genome.wustl.edu	37	6	41557744	41557745	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41557744	41557745	TC	-	DEL	FOXP4	NM_001012426	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1193_1194	p.S399fs	1.000:1.000	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	(deletion:cds_exon[41557701,41557908])	no_errors	
GPCPD1	0	genome.wustl.edu	37	20	5556511	5556511	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	5556511	5556511	A	C	SNP	GPCPD1	NM_019593	human	genbank	57_37b	-1	validated	silent	c.819	p.T273	0.931	NULL	superfamily_CBD_4,HMMPfam_CBM_20,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD	-	no_errors	
GPR153	387509	genome.wustl.edu	37	1	6314757	6314758	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6314757	6314758	-	A	INS	GPR153	NM_207370	human	genbank	57_37b	-1	validated	frame_shift_ins	c.209_208	p.R70fs	1.000:1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
GZMH	2999	genome.wustl.edu	37	14	25075891	25075891	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	25075891	25075891	T	A	SNP	GZMH	NM_033423	human	genbank	57_37b	-1	provisional	missense	c.659	p.N220I	0.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
ISOC1	51015	genome.wustl.edu	37	5	128448599	128448599	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	128448599	128448599	C	T	SNP	ISOC1	NM_016048	human	genbank	57_37b	+1	validated	nonsense	c.802	p.Q268*	1.000	superfamily_Iscrsm_hydrolase,HMMPfam_Isochorismatase	superfamily_Iscrsm_hydrolase,HMMPfam_Isochorismatase	-	no_errors	
KCND1	3750	genome.wustl.edu	37	X	48825777	48825777	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48825777	48825777	C	G	SNP	KCND1	NM_004979	human	genbank	57_37b	-1	reviewed	missense	c.902	p.R301P	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
LARP7	51574	genome.wustl.edu	37	4	113567531	113567531	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	113567531	113567531	C	A	SNP	LARP7	NM_015454	human	genbank	57_37b	+1	validated	missense	c.227	p.S76Y	0.983	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00715,HMMPfam_La,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_RRM_3"	-	no_errors	
LOC100287207	0	genome.wustl.edu	37	6	30955398	30955398	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30955398	30955398	C	A	SNP	LOC100287207	XM_002342619	human	genbank	57_37b	-1	model	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	
LRRC16B	90668	genome.wustl.edu	37	14	24534915	24534915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24534915	24534915	G	A	SNP	LRRC16B	NM_138360	human	genbank	57_37b	+1	validated	missense	c.3481	p.G1161R	0.977	NULL	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
LRRC4C	57689	genome.wustl.edu	37	11	40136678	40136678	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	40136678	40136678	G	C	SNP	LRRC4C	NM_020929	human	genbank	57_37b	-1	validated	missense	c.1165	p.P389A	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	-	no_errors	
MAGEA10	4109	genome.wustl.edu	37	X	151303510	151303510	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151303510	151303510	C	-	DEL	MAGEA10	NM_001011543	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.583	p.D195fs	0.001	HMMPfam_MAGE	HMMPfam_MAGE	(deletion:cds_exon[151302983,151304092])	no_errors	
MAP3K12	7786	genome.wustl.edu	37	12	53879958	53879958	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53879958	53879958	G	-	DEL	MAP3K12	NM_006301	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.604	p.L202fs	1.000	superfamily_Kinase_like,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[53879840,53880031])	no_errors	
MLC1	23209	genome.wustl.edu	37	22	50523318	50523319	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50523318	50523319	-	A	INS	MLC1	NM_015166	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.14_13	p.P5fs	0.011:0.241	NULL	PatternScan_RIBOSOMAL_S14	-	no_errors	
NIN	51199	genome.wustl.edu	37	14	51228556	51228556	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	51228556	51228556	T	C	SNP	NIN	NM_020921	human	genbank	57_37b	-1	reviewed	silent	c.1848	p.E616	0.984	NULL	superfamily_EF-hand,HMMPfam_efhand	-	no_errors	
NIN	51199	genome.wustl.edu	37	14	51238049	51238049	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	51238049	51238049	C	A	SNP	NIN	NM_020921	human	genbank	57_37b	-1	reviewed	splice_site	c.1118+1	e8+1	1.000	-	-	-	no_errors	
OBSL1	23363	genome.wustl.edu	37	2	220432023	220432023	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220432023	220432023	G	A	SNP	OBSL1	NM_015311	human	genbank	57_37b	-1	provisional	silent	c.1809	p.H603	0.833	superfamily_FN_III-like	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_ig,HMMPfam_fn3,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_V-set	-	no_errors	
OR1I1	126370	genome.wustl.edu	37	19	15198108	15198108	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15198108	15198108	G	A	SNP	OR1I1	NM_001004713	human	genbank	57_37b	+1	provisional	missense	c.232	p.V78I	0.901	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4A15	81328	genome.wustl.edu	37	11	55135556	55135556	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55135556	55135556	C	T	SNP	OR4A15	NM_001005275	human	genbank	57_37b	+1	provisional	missense	c.197	p.T66M	0.035	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OXR1	55074	genome.wustl.edu	37	8	107718659	107718659	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	107718659	107718659	A	C	SNP	OXR1	NM_018002	human	genbank	57_37b	+1	validated	missense	c.910	p.T304P	0.104	NULL	superfamily_LysM domain,HMMSmart_SM00257,HMMPfam_LysM,HMMPfam_GRAM,HMMSmart_SM00584,HMMPfam_TLD	-	no_errors	
PDE4C	5143	genome.wustl.edu	37	19	18332958	18332958	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18332958	18332958	A	T	SNP	PDE4C	NM_000923	human	genbank	57_37b	-1	validated	missense	c.418	p.S140T	1.000	NULL	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
SOBP	55084	genome.wustl.edu	37	6	107908293	107908293	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	107908293	107908293	G	T	SNP	SOBP	NM_018013	human	genbank	57_37b	+1	validated	nonsense	c.583	p.E195*	1.000	NULL	NULL	-	no_errors	
SON	6651	genome.wustl.edu	37	21	34922545	34922545	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	34922545	34922545	G	T	SNP	SON	NM_138927	human	genbank	57_37b	+1	reviewed	silent	c.1008	p.A336	0.715	NULL	HMMSmart_SM00443,HMMPfam_G-patch,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm	-	no_errors	
SRBD1	55133	genome.wustl.edu	37	2	45812872	45812872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	45812872	45812872	G	A	SNP	SRBD1	NM_018079	human	genbank	57_37b	-1	validated	silent	c.690	p.A230	1.000	HMMPfam_Tex_N	HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMPfam_S1,HMMSmart_SM00316	-	no_errors	
STAB1	23166	genome.wustl.edu	37	3	52544472	52544472	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52544472	52544472	G	C	SNP	STAB1	NM_015136	human	genbank	57_37b	+1	reviewed	missense	c.2736	p.M912I	0.000	superfamily_EGF/Laminin,HMMSmart_SM00181	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00180,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FAS1 domain,HMMSmart_SM00554,HMMPfam_Fasciclin,PatternScan_CYTOCHROME_P450,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1	-	no_errors	
SUPT7L	9913	genome.wustl.edu	37	2	27876562	27876562	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27876562	27876562	C	T	SNP	SUPT7L	NM_014860	human	genbank	57_37b	-1	provisional	silent	c.1035	p.E345	1.000	NULL	HMMPfam_Bromo_TP,HMMSmart_SM00576	-	no_errors	
SYNGR4	23546	genome.wustl.edu	37	19	48879441	48879441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48879441	48879441	C	T	SNP	SYNGR4	NM_012451	human	genbank	57_37b	+1	reviewed	missense	c.571	p.P191S	0.998	NULL	HMMPfam_MARVEL	-	no_errors	
TMC6	11322	genome.wustl.edu	37	17	76109253	76109253	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76109253	76109253	C	T	SNP	TMC6	NM_001127198	human	genbank	57_37b	-1	reviewed	silent	c.2394	p.L798	0.000	NULL	HMMPfam_TMC	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579355	7579355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579355	7579355	A	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.332	p.L111P	0.684	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRPC4AP	26133	genome.wustl.edu	37	20	33623023	33623023	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33623023	33623023	G	A	SNP	TRPC4AP	NM_015638	human	genbank	57_37b	-1	validated	silent	c.954	p.F318	1.000	NULL	NULL	-	no_errors	
TSR1	55720	genome.wustl.edu	37	17	2236988	2236988	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2236988	2236988	T	C	SNP	TSR1	NM_018128	human	genbank	57_37b	-1	validated	missense	c.1004	p.D335G	0.001	NULL	HMMPfam_AARP2CN,HMMSmart_AARP2CN,HMMPfam_DUF663	-	no_errors	
UBA5	79876	genome.wustl.edu	37	3	132379431	132379431	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	132379431	132379431	G	A	SNP	UBA5	NM_024818	human	genbank	57_37b	+1	reviewed	missense	c.50	p.R17Q	0.994	NULL	superfamily_MoeB,HMMPfam_ThiF	-	no_errors	
USP42	84132	genome.wustl.edu	37	7	6196533	6196533	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6196533	6196533	T	G	SNP	USP42	NM_032172	human	genbank	57_37b	+1	validated	missense	c.3790	p.L1264V	0.002	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors	
XIRP2	129446	genome.wustl.edu	37	2	168101657	168101657	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	168101657	168101657	A	G	SNP	XIRP2	NM_152381	human	genbank	57_37b	+1	validated	missense	c.3755	p.K1252R	0.997	NULL	HMMPfam_Xin	-	no_errors	
ZDHHC11	79844	genome.wustl.edu	37	5	801252	801252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	801252	801252	C	T	SNP	ZDHHC11	NM_024786	human	genbank	57_37b	-1	validated	missense	c.1209	p.M403I	0.000	NULL	HMMPfam_zf-DHHC	-	no_errors	
ZNF518B	85460	genome.wustl.edu	37	4	10447420	10447420	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	10447420	10447420	T	A	SNP	ZNF518B	NM_053042	human	genbank	57_37b	-1	validated	missense	c.533	p.Q178L	1.000	HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF878	0	genome.wustl.edu	37	19	12154855	12154855	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04J-01	TCGA-AQ-A04J-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12154855	12154855	T	A	SNP	ZNF878	NM_001080404	human	genbank	57_37b	-1	inferred	missense	c.1502	p.K501M	0.008	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
