Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADCY7	113	genome.wustl.edu	37	16	50342658	50342658	+	Silent	SNP	C	C	T	rs17289102	byCluster;byFrequency;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50342658	50342658	C	T	SNP	ADCY7	NM_001114	human	genbank	57_37b	+1	reviewed	silent	c.2016	p.A672	0.069	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-		
ALDH1A1	216	genome.wustl.edu	37	9	75516163	75516163	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	75516163	75516163	G	C	SNP	ALDH1A1	NM_000689	human	genbank	57_37b	-1	reviewed	silent	c.1467	p.V489	1.000	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ANKRD52	0	genome.wustl.edu	37	12	56646569	56646569	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56646569	56646569	G	A	SNP	ANKRD52	NM_173595	human	genbank	57_37b	-1	validated	silent	c.1296	p.S432	0.998	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	HMMSmart_ANK,HMMPfam_Ank,superfamily_ANK	-	no_errors	
APOB48R	55911	genome.wustl.edu	37	16	28508338	28508338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28508338	28508338	C	T	SNP	APOB48R	NM_018690	human	genbank	57_37b	+1	reviewed	missense	c.1949	p.A650V	0.006	NULL	NULL	-	no_errors	
C14orf38	729665	genome.wustl.edu	37	14	60004781	60004781	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	60004781	60004781	T	C	SNP	C14orf38	ENST00000281581	human	ensembl	57_37b	-1	known	missense	c.1583	p.N528S	0.000	NULL	NULL	-	no_errors	
C14orf49	161176	genome.wustl.edu	37	14	95906321	95906321	+	Missense_Mutation	SNP	G	G	A	rs9671369	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95906321	95906321	G	A	SNP	C14orf49	NM_152592	human	genbank	57_37b	-1	validated	missense	c.2003	p.T668M	0.082	superfamily_Spectrin repeat,HMMSmart_SM00150	HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_KASH	-		
C19orf39	126074	genome.wustl.edu	37	19	11485555	11485559	+	Frame_Shift_Del	DEL	CAAAG	CAAAG	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	CAAAG	CAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11485555	11485559	CAAAG	-	DEL	C19orf39	NM_175871	human	genbank	57_37b	+1	validated	frame_shift_del	c.136_140	p.Q46fs	0.995:1.000:1.000:1.000:1.000	superfamily_SSF52540	superfamily_SSF52540	(deletion:cds_exon[11485420,11485605])	no_errors	
C6orf204	387119	genome.wustl.edu	37	6	118953701	118953701	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	118953701	118953701	A	G	SNP	C6orf204	NM_001042475	human	genbank	57_37b	-1	validated	silent	c.147	p.H49	0.979	NULL	NULL	-	no_errors	
C8orf79	286032	genome.wustl.edu	37	8	12878609	12878609	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12878609	12878609	G	A	SNP	C8orf79	NM_020844	human	genbank	57_37b	+1	validated	missense	c.421	p.V141I	0.995	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors	
CACNA2D2	9254	genome.wustl.edu	37	3	50404289	50404289	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50404289	50404289	G	C	SNP	CACNA2D2	NM_001005505	human	genbank	57_37b	-1	reviewed	missense	c.2562	p.N854K	1.000	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1,HMMPfam_VGCC_alpha2	-	no_errors	
CALR	811	genome.wustl.edu	37	19	13054630	13054630	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13054630	13054630	A	G	SNP	CALR	NM_004343	human	genbank	57_37b	+1	reviewed	missense	c.1157	p.E386G	0.997	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Calreticulin,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,PatternScan_CALRETICULIN_REPEAT	-	no_errors	
COLEC12	81035	genome.wustl.edu	37	18	334994	334994	+	Missense_Mutation	SNP	A	A	G	rs2305025	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	334994	334994	A	G	SNP	COLEC12	NM_130386	human	genbank	57_37b	-1	validated	missense	c.1564	p.S522P	0.399	NULL	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-		
CSH2	1443	genome.wustl.edu	37	17	61950968	61950968	+	Missense_Mutation	SNP	C	C	T	rs41295025	byFrequency	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61950968	61950968	C	T	SNP	CSH2	NM_020991	human	genbank	57_37b	-1	reviewed	missense	c.7	p.A3T	0.998	NULL	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_1,PatternScan_SOMATOTROPIN_2	-		
CYP2A13	1553	genome.wustl.edu	37	19	41596335	41596335	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41596335	41596335	C	T	SNP	CYP2A13	NM_000766	human	genbank	57_37b	+1	reviewed	silent	c.520	p.L174	0.641	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYP3A4	1576	genome.wustl.edu	37	7	99367407	99367407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99367407	99367407	G	A	SNP	CYP3A4	NM_017460	human	genbank	57_37b	-1	reviewed	missense	c.505	p.P169S	0.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DNAH10	196385	genome.wustl.edu	37	12	124265682	124265682	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124265682	124265682	T	A	SNP	DNAH10	NM_207437	human	genbank	57_37b	+1	validated	missense	c.494	p.V165D	0.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
ENSG00000210196	0	genome.wustl.edu	37	MT	15961	15961	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	15961	15961	G	A	SNP	ENSG00000210196	ENST00000387461	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000211459	0	genome.wustl.edu	37	MT	1081	1081	+	RNA	SNP	T	T	C	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	1081	1081	T	C	SNP	ENSG00000211459	ENST00000389680	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000245932	0	genome.wustl.edu	37	19	53302908	53302908	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53302908	53302908	C	T	SNP	ENSG00000245932	ENST00000500436	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENTPD7	57089	genome.wustl.edu	37	10	101462392	101462392	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	101462392	101462392	G	-	DEL	ENTPD7	NM_020354	human	genbank	57_37b	+1	validated	frame_shift_del	c.1545	p.G516fs	1.000	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	(deletion:cds_exon[101462269,101462430])	no_errors	
FLNC	2318	genome.wustl.edu	37	7	128475401	128475401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128475401	128475401	G	A	SNP	FLNC	NM_001458	human	genbank	57_37b	+1	reviewed	missense	c.374	p.G125E	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,PatternScan_ACTININ_2	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors	
GABRA6	2559	genome.wustl.edu	37	5	161128618	161128618	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	161128618	161128618	C	A	SNP	GABRA6	NM_000811	human	genbank	57_37b	+1	reviewed	missense	c.1201	p.P401T	0.042	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors	
GAGE10	643832	genome.wustl.edu	37	X	49173740	49173740	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49173740	49173740	C	G	SNP	GAGE10	NM_001098413	human	genbank	57_37b	+1	provisional	missense	c.301	p.P101A	0.000	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors	
GAPVD1	26130	genome.wustl.edu	37	9	128061273	128061273	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	128061273	128061273	C	A	SNP	GAPVD1	NM_015635	human	genbank	57_37b	+1	validated	missense	c.73	p.Q25K	1.000	NULL	superfamily_Rho_GAP,HMMPfam_RasGAP,superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9	-	no_errors	
HTR2B	3357	genome.wustl.edu	37	2	231973672	231973672	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	231973672	231973672	A	-	DEL	HTR2B	NM_000867	human	genbank	57_37b	-1	validated	frame_shift_del	c.1005	p.M336fs	0.999	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[231973231,231974123])	no_errors	
IL16	3603	genome.wustl.edu	37	15	81598849	81598849	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	81598849	81598849	C	T	SNP	IL16	NM_172217	human	genbank	57_37b	+1	reviewed	silent	c.3768	p.H1256	0.120	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
KCNA6	3742	genome.wustl.edu	37	12	4919736	4919736	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	4919736	4919736	G	A	SNP	KCNA6	NM_002235	human	genbank	57_37b	+1	reviewed	missense	c.529	p.A177T	1.000	superfamily_SSF81324	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors	
KCNMA1	3778	genome.wustl.edu	37	10	78787645	78787645	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	78787645	78787645	A	G	SNP	KCNMA1	NM_001014797	human	genbank	57_37b	-1	reviewed	missense	c.1864	p.C622R	1.000	HMMPfam_BK_channel_a	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a,PatternScan_N6_MTASE	-	no_errors	
KIAA1644	85352	genome.wustl.edu	37	22	44681419	44681439	+	In_Frame_Del	DEL	GGGGCCCGCTGACCCGGCCGA	GGGGCCCGCTGACCCGGCCGA	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	GGGGCCCGCTGACCCGGCCGA	GGGGCCCGCTGACCCGGCCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	44681419	44681439	GGGGCCCGCTGACCCGGCCGA	-	DEL	KIAA1644	ENST00000381176	human	ensembl	57_37b	-1	known	in_frame_del	c.488_468	p.RPGQRAP157in_frame_del	0.008:0.008:0.008:0.008:0.001:0.000:0.841:0.923:1.000:0.999:0.970:0.046:0.037:0.045:0.017:0.827:0.979:0.963:0.165:0.127:0.117	NULL	NULL	(deletion:cds_exon[44681308,44681625])	no_errors	
KIF26A	26153	genome.wustl.edu	37	14	104641612	104641612	+	Silent	SNP	T	T	C	rs4906422	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	104641612	104641612	T	C	SNP	KIF26A	NM_015656	human	genbank	57_37b	+1	validated	silent	c.2487	p.G829	0.004	NULL	PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin	-		
KLK5	25818	genome.wustl.edu	37	19	51453283	51453283	+	Missense_Mutation	SNP	C	C	T	rs2232532	byCluster;byFrequency	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51453283	51453283	C	T	SNP	KLK5	NM_001077491	human	genbank	57_37b	-1	reviewed	missense	c.163	p.G55R	0.000	superfamily_Trypsin-like serine proteases	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-		
L1CAM	3897	genome.wustl.edu	37	X	153134370	153134370	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153134370	153134370	C	T	SNP	L1CAM	NM_000425	human	genbank	57_37b	-1	reviewed	silent	c.1305	p.T435	0.048	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
LOC400406	400406	genome.wustl.edu	37	15	78278764	78278764	+	RNA	SNP	C	C	T	rs60497311	byCluster;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78278764	78278764	C	T	SNP	LOC400406	XR_042358	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.256	-	-	-		
NHSL2	340527	genome.wustl.edu	37	X	71359877	71359877	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71359877	71359877	G	T	SNP	NHSL2	NM_001013627	human	genbank	57_37b	+1	provisional	missense	c.1381	p.D461Y	1.000	NULL	NULL	-	no_errors	
NT5C3	51251	genome.wustl.edu	37	7	33075569	33075569	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	33075569	33075569	C	G	SNP	NT5C3	NM_016489	human	genbank	57_37b	-1	reviewed	missense	c.13	p.E5Q	1.000	NULL	superfamily_SSF56784,HMMPfam_UMPH-1	-	no_errors	
OLIG3	167826	genome.wustl.edu	37	6	137815024	137815024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	137815024	137815024	C	T	SNP	OLIG3	NM_175747	human	genbank	57_37b	-1	provisional	missense	c.284	p.R95Q	1.000	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
PADI1	29943	genome.wustl.edu	37	1	17555508	17555508	+	Silent	SNP	G	G	T	rs2977234	byCluster;byFrequency;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17555508	17555508	G	T	SNP	PADI1	NM_013358	human	genbank	57_37b	+1	reviewed	silent	c.891	p.T297	0.991	HMMPfam_PAD,superfamily_Pentein	HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein	-		
PDGFRB	5159	genome.wustl.edu	37	5	149504348	149504348	+	Silent	SNP	C	C	T	rs56072663	byCluster	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149504348	149504348	C	T	SNP	PDGFRB	NM_002609	human	genbank	57_37b	-1	reviewed	silent	c.1854	p.T618	0.622	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-		
PHC1B	0	genome.wustl.edu	37	12	55807465	55807465	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55807465	55807465	G	T	SNP	PHC1B	ENST00000326184	human	ensembl	57_37b	-1	known	missense	c.1056	p.N352K	0.986	NULL	HMMPfam_zf-FCS,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
PHF8	23133	genome.wustl.edu	37	X	54029058	54029059	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54029058	54029059	AA	-	DEL	PHF8	NM_015107	human	genbank	57_37b	-1	validated	frame_shift_del	c.1004_1003	p.L335fs	1.000:1.000	superfamily_Clavaminate synthase-like,HMMSmart_SM00558	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_EGF_2,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	(deletion:cds_exon[54029028,54029115])	no_errors	
PLIN5	0	genome.wustl.edu	37	19	4529859	4529859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4529859	4529859	G	A	SNP	PLIN5	NM_001013706	human	genbank	57_37b	-1	validated	silent	c.276	p.L92	0.001	HMMPfam_Perilipin	HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors	
PSMD8	5714	genome.wustl.edu	37	19	38872860	38872860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38872860	38872860	G	A	SNP	PSMD8	NM_002812	human	genbank	57_37b	+1	reviewed	missense	c.907	p.A303T	1.000	NULL	PatternScan_PHOSPHOPANTETHEINE,HMMPfam_SAC3_GANP	-	no_errors	
PTGIR	5739	genome.wustl.edu	37	19	47124714	47124714	+	Silent	SNP	T	G	G	rs2229129	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47124714	47124714	T	G	SNP	PTGIR	NM_000960	human	genbank	57_37b	-1	reviewed	silent	c.984	p.S328	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
RBM23	55147	genome.wustl.edu	37	14	23374208	23374208	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23374208	23374208	C	A	SNP	RBM23	NM_001077351	human	genbank	57_37b	-1	reviewed	missense	c.740	p.R247L	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors	
RNLS	55328	genome.wustl.edu	37	10	90122432	90122432	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	90122432	90122432	G	A	SNP	RNLS	NM_001031709	human	genbank	57_37b	-1	validated	nonsense	c.577	p.R193*	1.000	superfamily_FAD/NAD(P)-binding domain	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain	-	no_errors	
RPAP2	79871	genome.wustl.edu	37	1	92801915	92801915	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	92801915	92801915	T	-	DEL	RPAP2	ENST00000370343	human	ensembl	57_37b	+1	known	frame_shift_del	c.1550	p.L518fs	1.000	NULL	HMMPfam_RPAP2_Rtr1	(deletion:cds_exon[92801904,92801984])	no_errors	
SCN5A	6331	genome.wustl.edu	37	3	38601670	38601670	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38601670	38601670	C	T	SNP	SCN5A	NM_001099404	human	genbank	57_37b	-1	reviewed	missense	c.4213	p.V1405M	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors	
SDC4	6385	genome.wustl.edu	37	20	43976991	43976991	+	Missense_Mutation	SNP	A	A	G	rs4458268	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43976991	43976991	A	G	SNP	SDC4	NM_002999	human	genbank	57_37b	-1	reviewed	missense	c.34	p.F12L	0.687	NULL	HMMPfam_Syndecan,HMMSmart_SM00294,PatternScan_SYNDECAN	-		
SFTPA1	653509	genome.wustl.edu	37	10	81372138	81372138	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	81372138	81372138	C	T	SNP	SFTPA1	NM_001093770	human	genbank	57_37b	+1	validated	silent	c.243	p.I81	0.000	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C	-	no_errors	
SIX1	6495	genome.wustl.edu	37	14	61113136	61113136	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	61113136	61113136	G	A	SNP	SIX1	NM_005982	human	genbank	57_37b	-1	reviewed	silent	c.720	p.H240	0.977	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
SLC5A9	200010	genome.wustl.edu	37	1	48698155	48698155	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	48698155	48698155	C	T	SNP	SLC5A9	ENST00000425816	human	ensembl	57_37b	+1	known	nonsense	c.808	p.Q270*	1.000	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors	
SLC7A6OS	84138	genome.wustl.edu	37	16	68344696	68344696	+	Missense_Mutation	SNP	C	C	T	rs3803650	byCluster;byFrequency;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68344696	68344696	C	T	SNP	SLC7A6OS	NM_032178	human	genbank	57_37b	-1	validated	missense	c.134	p.G45D	0.014	NULL	NULL	-		
SSPO	23145	genome.wustl.edu	37	7	149500315	149500315	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149500315	149500315	A	C	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	missense	c.7841	p.D2614A	1.000	superfamily_Serine proterase inhibitors	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-	no_errors	
SSPO	23145	genome.wustl.edu	37	7	149516486	149516486	+	Silent	SNP	A	A	G	rs6464034	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149516486	149516486	A	G	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	silent	c.11889	p.G3963	0.921	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,PatternScan_BPTI_KUNITZ_1,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_Galactose-binding domain-like,PatternScan_EGF_1,HMMPfam_C8,PatternScan_GLYCO_HORMONE_BETA_1,HMMPfam_TIL	-		
TMIGD2	126259	genome.wustl.edu	37	19	4298146	4298146	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4298146	4298146	G	A	SNP	TMIGD2	NM_144615	human	genbank	57_37b	-1	validated	silent	c.243	p.C81	0.198	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors	
TNS1	7145	genome.wustl.edu	37	2	218683368	218683368	+	Silent	SNP	C	C	T	rs34144104	byCluster;byFrequency;by1000genomes	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	218683368	218683368	C	T	SNP	TNS1	NM_022648	human	genbank	57_37b	-1	reviewed	silent	c.3375	p.P1125	0.037	NULL	superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	-		
TP53	7157	genome.wustl.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578271	7578271	T	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.578	p.H193R	0.998	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
UBR5	51366	genome.wustl.edu	37	8	103271312	103271312	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103271312	103271312	C	A	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	nonsense	c.8002	p.E2668*	1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
YTHDC1	91746	genome.wustl.edu	37	4	69202888	69202902	+	In_Frame_Del	DEL	TCTTCCTCCTCCTCC	TCTTCCTCCTCCTCC	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	TCTTCCTCCTCCTCC	TCTTCCTCCTCCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69202888	69202902	TCTTCCTCCTCCTCC	-	DEL	YTHDC1	NM_001031732	human	genbank	57_37b	-1	validated	in_frame_del	c.740_726	p.EEEEE245in_frame_del	1.000:1.000:0.643:0.997:0.998:0.921:0.997:0.993:0.693:0.978:0.990:0.980:0.987:0.986:0.135	NULL	HMMPfam_YTH	(deletion:cds_exon[69202745,69203168])	no_errors	
ZBTB49	0	genome.wustl.edu	37	4	4304086	4304086	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	4304086	4304086	C	-	DEL	ZBTB49	NM_145291	human	genbank	57_37b	+1	validated	frame_shift_del	c.523	p.P175fs	0.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[4303716,4304818])	no_errors	
ZNF720	124411	genome.wustl.edu	37	16	31734054	31734054	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01	TCGA-AQ-A04L-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31734054	31734054	C	A	SNP	ZNF720	NM_001130913	human	genbank	57_37b	+1	validated	nonsense	c.111	p.Y37*	0.945	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	-	no_errors	
