Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC2	1244	genome.wustl.edu	37	10	101595869	101595869	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	101595869	101595869	C	T	SNP	ABCC2	NM_000392	human	genbank	57_37b	+1	reviewed	missense	c.3436	p.R1146C	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADCY9	115	genome.wustl.edu	37	16	4042255	4042255	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4042255	4042255	C	A	SNP	ADCY9	NM_001116	human	genbank	57_37b	-1	reviewed	missense	c.2099	p.G700V	1.000	NULL	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	
ALKBH7	84266	genome.wustl.edu	37	19	6374526	6374526	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6374526	6374526	G	A	SNP	ALKBH7	NM_032306	human	genbank	57_37b	+1	provisional	missense	c.429	p.M143I	1.000	NULL	NULL	-	no_errors	
BCL9	607	genome.wustl.edu	37	1	147095879	147095879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	147095879	147095879	C	T	SNP	BCL9	NM_004326	human	genbank	57_37b	+1	reviewed	missense	c.3400	p.R1134W	1.000	NULL	NULL	-	no_errors	
BEST1	7439	genome.wustl.edu	37	11	61730553	61730553	+	Missense_Mutation	SNP	T	T	C	rs17185413	byCluster;byFrequency;by1000genomes	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61730553	61730553	T	C	SNP	BEST1	NM_001139443	human	genbank	57_37b	+1	reviewed	missense	c.1747	p.S583P	0.000	NULL	HMMPfam_Bestrophin	-		
BTBD12	84464	genome.wustl.edu	37	16	3640194	3640194	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3640194	3640194	C	A	SNP	BTBD12	NM_032444	human	genbank	57_37b	-1	provisional	missense	c.3445	p.D1149Y	0.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-	no_errors	
C15orf2	23742	genome.wustl.edu	37	15	24923646	24923646	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	24923646	24923646	C	-	DEL	C15orf2	NM_018958	human	genbank	57_37b	+1	validated	frame_shift_del	c.2632	p.Q878fs	0.001	NULL	NULL	(deletion:cds_exon[24921015,24924485])	no_errors	
C17orf104	284071	genome.wustl.edu	37	17	42745436	42745436	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42745436	42745436	C	G	SNP	C17orf104	NM_001145080	human	genbank	57_37b	+1	validated	nonsense	c.2157	p.Y719*	0.992	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors	
C7orf27	221927	genome.wustl.edu	37	7	2580914	2580914	+	Missense_Mutation	SNP	C	C	T	rs62442586	byCluster;byFrequency;by1000genomes	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2580914	2580914	C	T	SNP	C7orf27	ENST00000396970	human	ensembl	57_37b	-1	known	missense	c.637	p.G213S	0.000	NULL	NULL	-		
CALML6	163688	genome.wustl.edu	37	1	1848267	1848267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1848267	1848267	C	T	SNP	CALML6	NM_138705	human	genbank	57_37b	+1	validated	silent	c.330	p.S110	0.213	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
CASP5	838	genome.wustl.edu	37	11	104869708	104869708	+	Missense_Mutation	SNP	G	G	C	rs523104	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	104869708	104869708	G	C	SNP	CASP5	NM_001136112	human	genbank	57_37b	-1	reviewed	missense	c.1039	p.L347V	0.000	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-		
CELA2B	51032	genome.wustl.edu	37	1	15802980	15802980	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15802980	15802980	G	A	SNP	CELA2B	NM_015849	human	genbank	57_37b	+1	reviewed	silent	c.69	p.A23	0.000	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
DAO	1610	genome.wustl.edu	37	12	109288102	109288102	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109288102	109288102	C	T	SNP	DAO	NM_001917	human	genbank	57_37b	+1	reviewed	nonsense	c.571	p.R191*	1.000	superfamily_Nucleotide-binding domain,HMMPfam_DAO	superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,PatternScan_AA_TRNA_LIGASE_I,PatternScan_DAO	-	no_errors	
DNAH5	1767	genome.wustl.edu	37	5	13737575	13737575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13737575	13737575	C	T	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	missense	c.11241	p.M3747I	0.999	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
ENSG00000213985	0	genome.wustl.edu	37	19	20369546	20369546	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20369546	20369546	A	C	SNP	ENSG00000213985	ENST00000397155	human	ensembl	57_37b	+1	known	silent	c.507	p.P169	0.995	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE	-	no_errors	
FEZF2	55079	genome.wustl.edu	37	3	62356989	62356989	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	62356989	62356989	C	A	SNP	FEZF2	NM_018008	human	genbank	57_37b	-1	validated	silent	c.1023	p.A341	0.989	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
KIF2C	11004	genome.wustl.edu	37	1	45213334	45213334	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	45213334	45213334	G	A	SNP	KIF2C	NM_006845	human	genbank	57_37b	+1	validated	missense	c.278	p.R93Q	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
KLF17	128209	genome.wustl.edu	37	1	44595388	44595388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44595388	44595388	G	A	SNP	KLF17	NM_173484	human	genbank	57_37b	+1	validated	missense	c.445	p.G149R	0.004	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
LOC100289412	0	genome.wustl.edu	37	9	135985448	135985448	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135985448	135985448	C	A	SNP	LOC100289412	XM_002344240	human	genbank	57_37b	+1	model	missense	c.767	p.T256N	0.000	NULL	NULL	-	no_errors	
MAPKBP1	23005	genome.wustl.edu	37	15	42104263	42104263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42104263	42104263	G	A	SNP	MAPKBP1	NM_001128608	human	genbank	57_37b	+1	validated	missense	c.436	p.A146T	0.953	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_PTS_HPR_SER	-	no_errors	
MGAM	8972	genome.wustl.edu	37	7	141765159	141765159	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141765159	141765159	G	A	SNP	MGAM	NM_004668	human	genbank	57_37b	+1	reviewed	silent	c.4509	p.Q1503	1.000	HMMPfam_Glyco_hydro_31	HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31	-	no_errors	
MGAM	8972	genome.wustl.edu	37	7	141765575	141765575	+	Missense_Mutation	SNP	A	A	T	rs4507684	byCluster	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141765575	141765575	A	T	SNP	MGAM	ENST00000475668	human	ensembl	57_37b	+1	known	missense	c.4714	p.M1572L	1.000	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-		
MYOM2	9172	genome.wustl.edu	37	8	2048831	2048831	+	Missense_Mutation	SNP	A	A	G	rs968381	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	2048831	2048831	A	G	SNP	MYOM2	NM_003970	human	genbank	57_37b	+1	validated	missense	c.2606	p.N869S	0.323	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_ig,HMMSmart_IGc2	-		
NMT1	4836	genome.wustl.edu	37	17	43183002	43183002	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43183002	43183002	C	T	SNP	NMT1	NM_021079	human	genbank	57_37b	+1	provisional	nonsense	c.1486	p.Q496*	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_NMT,PatternScan_NMT_1,HMMPfam_NMT_C,PatternScan_NMT_2	-	no_errors	
OR51A7	119687	genome.wustl.edu	37	11	4928841	4928841	+	Missense_Mutation	SNP	T	T	C	rs7108225	byCluster;byFrequency;by1000genomes	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4928841	4928841	T	C	SNP	OR51A7	NM_001004749	human	genbank	57_37b	+1	provisional	missense	c.242	p.M81T	0.931	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
PABPC4L	132430	genome.wustl.edu	37	4	135121651	135121651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	135121651	135121651	C	T	SNP	PABPC4L	NM_001114734	human	genbank	57_37b	-1	validated	missense	c.524	p.R175Q	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361	-	no_errors	
PCDHGB6	56100	genome.wustl.edu	37	5	140788351	140788351	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140788351	140788351	A	T	SNP	PCDHGB6	NM_018926	human	genbank	57_37b	+1	reviewed	missense	c.582	p.L194F	0.046	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PKD1L2	114780	genome.wustl.edu	37	16	81242149	81242150	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81242149	81242150	TT	-	DEL	PKD1L2	NM_001076780	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.707_706	p.N236fs	0.998:0.999	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[81242096,81242206])	no_errors	
PLD5	200150	genome.wustl.edu	37	1	242253180	242253180	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	242253180	242253180	G	A	SNP	PLD5	NM_152666	human	genbank	57_37b	-1	provisional	silent	c.1311	p.G437	0.000	NULL	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	-	no_errors	
PVRL3	25945	genome.wustl.edu	37	3	110837787	110837787	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	110837787	110837787	T	G	SNP	PVRL3	NM_015480	human	genbank	57_37b	+1	provisional	missense	c.787	p.L263V	0.998	superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C2-set_2	-	no_errors	
RFX4	5992	genome.wustl.edu	37	12	107078653	107078653	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	107078653	107078653	C	T	SNP	RFX4	NM_032491	human	genbank	57_37b	+1	reviewed	missense	c.62	p.S21L	0.003	NULL	NULL	-	no_errors	
RFXANK	8625	genome.wustl.edu	37	19	19304795	19304795	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19304795	19304795	C	T	SNP	RFXANK	NM_003721	human	genbank	57_37b	+1	reviewed	nonsense	c.40	p.Q14*	0.635	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
RGPD3	653489	genome.wustl.edu	37	2	107040513	107040516	+	Frame_Shift_Del	DEL	TAGA	TAGA	-	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	TAGA	TAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	107040513	107040516	TAGA	-	DEL	RGPD3	NM_001144013	human	genbank	57_37b	-1	provisional	frame_shift_del	c.3910_3907	p.K1304fs	1.000:0.998:1.000:1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip	(deletion:cds_exon[107039499,107041722])	no_errors	
RGS5	8490	genome.wustl.edu	37	1	163117185	163117185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	163117185	163117185	C	T	SNP	RGS5	NM_003617	human	genbank	57_37b	-1	validated	missense	c.493	p.D165N	1.000	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors	
SMCHD1	23347	genome.wustl.edu	37	18	2743899	2743899	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	2743899	2743899	C	T	SNP	SMCHD1	NM_015295	human	genbank	57_37b	+1	validated	silent	c.3774	p.L1258	0.575	NULL	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors	
SULT2B1	6820	genome.wustl.edu	37	19	49102399	49102399	+	Silent	SNP	C	T	T	rs1132054	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49102399	49102399	C	T	SNP	SULT2B1	NM_177973	human	genbank	57_37b	+1	reviewed	silent	c.834	p.C278	0.003	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-		
TEK	7010	genome.wustl.edu	37	9	27169494	27169494	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	27169494	27169494	G	A	SNP	TEK	NM_000459	human	genbank	57_37b	+1	reviewed	silent	c.495	p.V165	1.000	NULL	HMMPfam_Ig_Tie2_1,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF48726,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TMEM9B	56674	genome.wustl.edu	37	11	8969901	8969901	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	8969901	8969901	T	A	SNP	TMEM9B	NM_020644	human	genbank	57_37b	-1	provisional	missense	c.563	p.K188M	1.000	HMMPfam_Tmemb_9	HMMPfam_Tmemb_9	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578429	7578429	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578429	7578429	C	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.501	p.Q167fs	0.986	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578371,7578554])	no_errors	
UHRF1BP1L	23074	genome.wustl.edu	37	12	100482727	100482727	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	100482727	100482727	T	C	SNP	UHRF1BP1L	NM_015054	human	genbank	57_37b	-1	validated	silent	c.987	p.L329	1.000	NULL	NULL	-	no_errors	
UNC45A	55898	genome.wustl.edu	37	15	91496180	91496180	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91496180	91496180	G	T	SNP	UNC45A	NM_018671	human	genbank	57_37b	+1	validated	missense	c.2325	p.K775N	1.000	superfamily_ARM repeat	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_2,superfamily_ARM repeat	-	no_errors	
VPS53	55275	genome.wustl.edu	37	17	489514	489514	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	489514	489514	C	A	SNP	VPS53	NM_001128159	human	genbank	57_37b	-1	reviewed	missense	c.1309	p.D437Y	1.000	HMMPfam_Vps53_N	HMMPfam_Vps53_N	-	no_errors	
WASF3	10810	genome.wustl.edu	37	13	27259977	27259977	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	27259977	27259977	G	A	SNP	WASF3	NM_006646	human	genbank	57_37b	+1	reviewed	missense	c.1504	p.D502N	1.000	NULL	HMMPfam_WH2,HMMSmart_SM00246	-	no_errors	
WSB2	55884	genome.wustl.edu	37	12	118472017	118472017	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U3-01	TCGA-AR-A0U3-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	118472017	118472017	G	T	SNP	WSB2	NM_018639	human	genbank	57_37b	-1	reviewed	missense	c.1199	p.T400K	1.000	HMMSmart_SOCS,HMMPfam_SOCS_box	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SOCS,HMMPfam_SOCS_box	-	no_errors	
