Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACACB	32	genome.wustl.edu	37	12	109675151	109675151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109675151	109675151	G	A	SNP	ACACB	NM_001093	human	genbank	57_37b	+1	reviewed	missense	c.4628	p.R1543H	1.000	HMMPfam_ACC_central	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans	-	no_errors	
ACAD10	80724	genome.wustl.edu	37	12	112186223	112186223	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112186223	112186223	C	A	SNP	ACAD10	NM_001136538	human	genbank	57_37b	+1	reviewed	missense	c.2681	p.T894N	0.970	superfamily_Acyl-CoA dehydrogenase NM domain-like	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Protein kinase-like (PK-like),HMMPfam_APH,PatternScan_PROTEIN_KINASE_TYR,superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_THIOL_PROTEASE_HIS	-	no_errors	
ADAMDEC1	27299	genome.wustl.edu	37	8	24257811	24257811	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	24257811	24257811	G	A	SNP	ADAMDEC1	NM_014479	human	genbank	57_37b	+1	validated	silent	c.1140	p.L380	1.000	superfamily_SSF55486,HMMPfam_Reprolysin	PatternScan_CYSTEINE_SWITCH,PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_DISIN	-	no_errors	
ADRA1A	148	genome.wustl.edu	37	8	26721870	26721870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	26721870	26721870	C	T	SNP	ADRA1A	NM_033303	human	genbank	57_37b	-1	reviewed	missense	c.617	p.R206H	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
AKD1	221264	genome.wustl.edu	37	6	109850252	109850252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	109850252	109850252	C	T	SNP	AKD1	ENST00000424296	human	ensembl	57_37b	-1	known	missense	c.832	p.A278T	1.000	superfamily_SSF52540	HMMPfam_YHS,superfamily_SSF52540,HMMPfam_ADK	-	no_errors	
AMBRA1	55626	genome.wustl.edu	37	11	46419289	46419289	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46419289	46419289	G	T	SNP	AMBRA1	NM_017749	human	genbank	57_37b	-1	validated	missense	c.3338	p.T1113N	0.001	NULL	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
ARHGAP22	58504	genome.wustl.edu	37	10	49701493	49701493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	49701493	49701493	C	T	SNP	ARHGAP22	ENST00000417247	human	ensembl	57_37b	-1	known	missense	c.41	p.R14H	0.000	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
ASXL2	55252	genome.wustl.edu	37	2	25994378	25994378	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25994378	25994378	T	C	SNP	ASXL2	NM_018263	human	genbank	57_37b	-1	validated	silent	c.435	p.P145	0.816	NULL	NULL	-	no_errors	
ASXL3	80816	genome.wustl.edu	37	18	31314340	31314340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	31314340	31314340	C	T	SNP	ASXL3	NM_030632	human	genbank	57_37b	+1	provisional	missense	c.1043	p.P348L	1.000	NULL	NULL	-	no_errors	
AZFP	0	genome.wustl.edu	37	2	133090252	133090252	+	RNA	SNP	G	G	A	rs77957424	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	133090252	133090252	G	A	SNP	AZFP	XR_078264	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.001	-	-	-		
BANP	54971	genome.wustl.edu	37	16	88098920	88098920	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88098920	88098920	C	T	SNP	BANP	NM_079837	human	genbank	57_37b	+1	reviewed	silent	c.1242	p.F414	0.029	NULL	HMMPfam_BEN	-	no_errors	
BCAN	63827	genome.wustl.edu	37	1	156622540	156622540	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156622540	156622540	G	T	SNP	BCAN	NM_021948	human	genbank	57_37b	+1	validated	missense	c.1798	p.A600S	0.264	NULL	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406,PatternScan_IG_MHC,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
C18orf19	125228	genome.wustl.edu	37	18	13681832	13681832	+	Missense_Mutation	SNP	C	C	G	rs116967198	by1000genomes	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	13681832	13681832	C	G	SNP	C18orf19	NM_001098801	human	genbank	57_37b	-1	validated	missense	c.245	p.R82P	0.000	NULL	HMMPfam_DUF1279	-		
C21orf70	85395	genome.wustl.edu	37	21	46380034	46380034	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46380034	46380034	T	C	SNP	C21orf70	NM_058190	human	genbank	57_37b	+1	predicted	silent	c.303	p.V101	0.001	NULL	NULL	-	no_errors	
C6orf132	647024	genome.wustl.edu	37	6	42074796	42074796	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42074796	42074796	C	G	SNP	C6orf132	ENST00000341865	human	ensembl	57_37b	-1	known	missense	c.854	p.G285A	0.128	NULL	NULL	-	no_errors	
C6orf52	347744	genome.wustl.edu	37	6	10671667	10671667	+	RNA	SNP	G	G	A	rs41271785	byCluster;by1000genomes	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10671667	10671667	G	A	SNP	C6orf52	NR_026736	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.000	-	-	-		
C7orf10	79783	genome.wustl.edu	37	7	40723677	40723677	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	40723677	40723677	G	C	SNP	C7orf10	NM_024728	human	genbank	57_37b	+1	provisional	missense	c.1022	p.S341T	0.000	superfamily_CoA-Trfase_fam_III	superfamily_CoA-Trfase_fam_III,HMMPfam_CoA_transf_3	-	no_errors	
C7orf61	402573	genome.wustl.edu	37	7	100054503	100054503	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100054503	100054503	C	T	SNP	C7orf61	NM_001004323	human	genbank	57_37b	-1	predicted	missense	c.493	p.V165I	0.005	NULL	NULL	-	no_errors	
CDH6	1004	genome.wustl.edu	37	5	31267600	31267600	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	31267600	31267600	T	G	SNP	CDH6	NM_004932	human	genbank	57_37b	+1	reviewed	missense	c.20	p.F7C	1.000	NULL	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CFHR1	3078	genome.wustl.edu	37	1	196800996	196800996	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196800996	196800996	A	G	SNP	CFHR1	NM_002113	human	genbank	57_37b	+1	reviewed	missense	c.860	p.K287R	0.003	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors	
CLDN23	137075	genome.wustl.edu	37	8	8560424	8560424	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	8560424	8560424	G	T	SNP	CLDN23	NM_194284	human	genbank	57_37b	+1	validated	silent	c.516	p.L172	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors	
CNTN6	27255	genome.wustl.edu	37	3	1320096	1320096	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	1320096	1320096	G	T	SNP	CNTN6	NM_014461	human	genbank	57_37b	+1	reviewed	splice_site	c.359-1	e4-1	1.000	-	-	-	no_errors	
COL29A1	256076	genome.wustl.edu	37	3	130187808	130187808	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130187808	130187808	C	T	SNP	COL29A1	NM_153264	human	genbank	57_37b	+1	validated	silent	c.6960	p.Y2320	0.999	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
CP110	9738	genome.wustl.edu	37	16	19556209	19556209	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19556209	19556209	G	C	SNP	CP110	NM_014711	human	genbank	57_37b	+1	validated	missense	c.2575	p.V859L	1.000	NULL	NULL	-	no_errors	
CTAGE6	340307	genome.wustl.edu	37	7	143453654	143453654	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	143453654	143453654	C	A	SNP	CTAGE6	NM_178561	human	genbank	57_37b	-1	validated	missense	c.1098	p.L366F	0.016	NULL	NULL	-	no_errors	
CYP4F11	57834	genome.wustl.edu	37	19	16038292	16038292	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16038292	16038292	A	T	SNP	CYP4F11	NM_001128932	human	genbank	57_37b	-1	reviewed	silent	c.345	p.A115	0.613	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors	
DKKL1	27120	genome.wustl.edu	37	19	49869131	49869131	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49869131	49869131	G	T	SNP	DKKL1	NM_014419	human	genbank	57_37b	+1	reviewed	missense	c.406	p.G136C	0.031	NULL	NULL	-	no_errors	
DNAH17	8632	genome.wustl.edu	37	17	76423090	76423090	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76423090	76423090	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	57_37b	-1	known	missense	c.12757	p.V4253F	1.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors	
DPCR1	135656	genome.wustl.edu	37	6	30919364	30919364	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30919364	30919364	T	C	SNP	DPCR1	ENST00000462446	human	ensembl	57_37b	+1	known	silent	c.3123	p.P1041	0.001	NULL	NULL	-	no_errors	
ENAH	55740	genome.wustl.edu	37	1	225742665	225742665	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	225742665	225742665	T	C	SNP	ENAH	NM_001008493	human	genbank	57_37b	-1	validated	missense	c.292	p.N98D	1.000	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_VASP_tetra	-	no_errors	
ENSG00000199407	0	genome.wustl.edu	37	10	13769842	13769842	+	RNA	SNP	A	A	G	rs12572591	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13769842	13769842	A	G	SNP	ENSG00000199407	ENST00000362537	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
FAM193B	54540	genome.wustl.edu	37	5	176964948	176964948	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176964948	176964948	G	-	DEL	FAM193B	NM_019057	human	genbank	57_37b	-1	validated	frame_shift_del	c.275	p.S92fs	1.000	NULL	NULL	(deletion:cds_exon[176964874,176965108])	no_errors	
HEATR7B2	133558	genome.wustl.edu	37	5	41048471	41048471	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41048471	41048471	C	G	SNP	HEATR7B2	NM_173489	human	genbank	57_37b	-1	validated	missense	c.1639	p.D547H	0.952	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
ING1	3621	genome.wustl.edu	37	13	111371953	111371953	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	111371953	111371953	G	T	SNP	ING1	NM_005537	human	genbank	57_37b	+1	reviewed	missense	c.943	p.A315S	0.976	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
INPP5D	3635	genome.wustl.edu	37	2	233925287	233925287	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233925287	233925287	C	T	SNP	INPP5D	ENST00000359570	human	ensembl	57_37b	+1	known	silent	c.99	p.S33	0.991	HMMSmart_SM00252,HMMPfam_SH2,superfamily_SH2 domain	HMMSmart_SM00252,HMMPfam_SH2,superfamily_SH2 domain,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos	-	no_errors	
ISM2	145501	genome.wustl.edu	37	14	77951026	77951026	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77951026	77951026	A	G	SNP	ISM2	NM_199296	human	genbank	57_37b	-1	reviewed	silent	c.378	p.D126	0.994	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00723,HMMPfam_AMOP	-	no_errors	
ITPR2	3709	genome.wustl.edu	37	12	26580852	26580852	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	26580852	26580852	T	G	SNP	ITPR2	NM_002223	human	genbank	57_37b	-1	validated	silent	c.6939	p.A2313	1.000	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
KCNH1	3756	genome.wustl.edu	37	1	210857058	210857058	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	210857058	210857058	C	A	SNP	KCNH1	NM_172362	human	genbank	57_37b	-1	reviewed	silent	c.2535	p.G845	0.033	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors	
KHSRP	8570	genome.wustl.edu	37	19	6415313	6415314	+	Splice_Site	INS	-	-	TG	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6415313	6415314	-	TG	INS	KHSRP	NM_003685	human	genbank	57_37b	-1	validated	splice_site_ins	c.1967-2_1967-1	e19-1	0.989:0.952	-	-	-	no_errors	
KIAA0182	23199	genome.wustl.edu	37	16	85667660	85667667	+	Frame_Shift_Del	DEL	CTGTCGGC	CTGTCGGC	-	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	CTGTCGGC	CTGTCGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	85667660	85667667	CTGTCGGC	-	DEL	KIAA0182	NM_014615	human	genbank	57_37b	+1	validated	frame_shift_del	c.148_155	p.L50fs	1.000:1.000:1.000:1.000:1.000:0.844:1.000:1.000	NULL	NULL	(deletion:cds_exon[85667520,85667738])	no_errors	
KIAA1324L	222223	genome.wustl.edu	37	7	86522367	86522367	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86522367	86522367	G	T	SNP	KIAA1324L	NM_001142749	human	genbank	57_37b	-1	validated	missense	c.2735	p.S912Y	1.000	NULL	superfamily_Growth factor receptor domain,HMMPfam_NCD3G,superfamily_Mannose 6-phosphate receptor domain	-	no_errors	
KIAA1324L	222223	genome.wustl.edu	37	7	86544037	86544037	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86544037	86544037	A	G	SNP	KIAA1324L	NM_001142749	human	genbank	57_37b	-1	validated	splice_site	c.1731+2	e13+2	1.000	-	-	-	no_errors	
L1CAM	3897	genome.wustl.edu	37	X	153130155	153130155	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153130155	153130155	G	T	SNP	L1CAM	NM_000425	human	genbank	57_37b	-1	reviewed	silent	c.3051	p.I1017	0.000	NULL	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
LOC100287512	0	genome.wustl.edu	37	3	15183296	15183296	+	RNA	SNP	G	A	A	rs13069720	byCluster;byFrequency	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	15183296	15183296	G	A	SNP	LOC100287512	XR_078279	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LOC100287645	0	genome.wustl.edu	37	14	74058810	74058810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74058810	74058810	C	T	SNP	LOC100287645	XM_002343286	human	genbank	57_37b	-1	model	missense	c.349	p.V117M	0.999	NULL	NULL	-	no_errors	
LOC100288198	0	genome.wustl.edu	37	6	79944327	79944327	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	79944327	79944327	G	C	SNP	LOC100288198	XM_002342644	human	genbank	57_37b	+1	model	missense	c.49	p.G17R	0.988	NULL	NULL	-	no_errors	
LOC100289293	0	genome.wustl.edu	37	2	132724018	132724018	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	132724018	132724018	C	T	SNP	LOC100289293	XM_002342261	human	genbank	57_37b	-1	model	silent	c.324	p.A108	0.016	NULL	NULL	-	no_errors	
LRP2	4036	genome.wustl.edu	37	2	170063595	170063595	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170063595	170063595	C	A	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	missense	c.6635	p.R2212I	0.695	superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors	
MDGA1	266727	genome.wustl.edu	37	6	37614094	37614094	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	37614094	37614094	G	T	SNP	MDGA1	NM_153487	human	genbank	57_37b	-1	validated	missense	c.2104	p.Q702K	1.000	superfamily_Fibronectin type III	PatternScan_NITROGENASE_1_1,HMMPfam_I-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00137,HMMPfam_MAM	-	no_errors	
MEF2B	4207	genome.wustl.edu	37	19	19258546	19258546	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19258546	19258546	G	A	SNP	MEF2B	NM_001145785	human	genbank	57_37b	-1	validated	silent	c.354	p.G118	0.321	NULL	HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF	-	no_errors	
MRPL20	55052	genome.wustl.edu	37	1	1337585	1337585	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1337585	1337585	G	A	SNP	MRPL20	NM_017971	human	genbank	57_37b	-1	reviewed	missense	c.328	p.P110S	1.000	HMMPfam_Ribosomal_L20,superfamily_Ribosomal protein L20	HMMPfam_Ribosomal_L20,superfamily_Ribosomal protein L20	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9070668	9070668	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9070668	9070668	G	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.16778	p.T5593N	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MYD88	4615	genome.wustl.edu	37	3	38180431	38180431	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38180431	38180431	A	T	SNP	MYD88	NM_002468	human	genbank	57_37b	+1	reviewed	silent	c.279	p.G93	0.801	superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors	
MYH14	79784	genome.wustl.edu	37	19	50713890	50713890	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50713890	50713890	C	T	SNP	MYH14	NM_001077186	human	genbank	57_37b	+1	reviewed	nonsense	c.268	p.R90*	1.000	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors	
MYH7B	57644	genome.wustl.edu	37	20	33577724	33577724	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33577724	33577724	T	C	SNP	MYH7B	NM_020884	human	genbank	57_37b	+1	validated	splice_site	c.1893+2	e18+2	1.000	-	-	-	no_errors	
NDUFS2	4720	genome.wustl.edu	37	1	161179917	161179917	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161179917	161179917	T	G	SNP	NDUFS2	NM_004550	human	genbank	57_37b	+1	reviewed	missense	c.719	p.L240R	0.998	superfamily_SSF56762,HMMPfam_Complex1_49kDa	superfamily_SSF56762,PatternScan_COMPLEX1_49K,HMMPfam_Complex1_49kDa	-	no_errors	
NEB	4703	genome.wustl.edu	37	2	152507244	152507244	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152507244	152507244	G	T	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	missense	c.7071	p.F2357L	0.042	HMMSmart_SM00227	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
NR0B2	8431	genome.wustl.edu	37	1	27240275	27240275	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27240275	27240275	G	C	SNP	NR0B2	NM_021969	human	genbank	57_37b	-1	reviewed	missense	c.157	p.H53D	0.000	superfamily_Str_ncl_receptor	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NSUN3	63899	genome.wustl.edu	37	3	93845211	93845211	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	93845211	93845211	C	G	SNP	NSUN3	NM_022072	human	genbank	57_37b	+1	provisional	missense	c.900	p.H300Q	0.688	superfamily_SSF53335	PatternScan_NOL1_NOP2_SUN,superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu	-	no_errors	
OPRM1	4988	genome.wustl.edu	37	6	154412347	154412347	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	154412347	154412347	G	C	SNP	OPRM1	NM_001145279	human	genbank	57_37b	+1	validated	missense	c.1183	p.V395L	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4C15	81309	genome.wustl.edu	37	11	55321983	55321983	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55321983	55321983	G	C	SNP	OR4C15	NM_001001920	human	genbank	57_37b	+1	provisional	silent	c.201	p.L67	0.679	superfamily_Family A G protein-coupled receptor-like,PatternScan_LECTIN_LEGUME_ALPHA	superfamily_Family A G protein-coupled receptor-like,PatternScan_LECTIN_LEGUME_ALPHA,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OSBPL1A	114876	genome.wustl.edu	37	18	21745043	21745043	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21745043	21745043	C	G	SNP	OSBPL1A	NM_080597	human	genbank	57_37b	-1	reviewed	missense	c.2736	p.E912D	0.998	HMMPfam_Oxysterol_BP	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors	
PADI2	11240	genome.wustl.edu	37	1	17418927	17418928	+	Frame_Shift_Ins	INS	-	-	GA	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17418927	17418928	-	GA	INS	PADI2	NM_007365	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.631_630	p.K210fs	1.000:1.000	HMMPfam_PAD_M,superfamily_PAD_central	superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909	-	no_errors	
PADI2	11240	genome.wustl.edu	37	1	17418927	17418930	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	TGTC	TGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17418927	17418930	TGTC	-	DEL	PADI2	NM_007365	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.631_628	p.D210fs	1.000:1.000:1.000:0.999	HMMPfam_PAD_M,superfamily_PAD_central	HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909	(deletion:cds_exon[17418903,17419028])	no_errors	
PCDHA9	9752	genome.wustl.edu	37	5	140230439	140230439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140230439	140230439	G	A	SNP	PCDHA9	NM_031857	human	genbank	57_37b	+1	reviewed	missense	c.2359	p.G787R	0.000	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PLXNA2	5362	genome.wustl.edu	37	1	208216496	208216496	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	208216496	208216496	G	T	SNP	PLXNA2	NM_025179	human	genbank	57_37b	-1	reviewed	silent	c.3927	p.R1309	1.000	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors	
POU3F4	5456	genome.wustl.edu	37	X	82763506	82763506	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	82763506	82763506	G	T	SNP	POU3F4	NM_000307	human	genbank	57_37b	+1	reviewed	silent	c.174	p.V58	1.000	NULL	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
PPEF1	5475	genome.wustl.edu	37	X	18822127	18822127	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18822127	18822127	C	A	SNP	PPEF1	NM_006240	human	genbank	57_37b	+1	reviewed	missense	c.1183	p.Q395K	0.034	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos	HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE,HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
PRKCE	5581	genome.wustl.edu	37	2	46234725	46234725	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	46234725	46234725	G	A	SNP	PRKCE	NM_005400	human	genbank	57_37b	+1	reviewed	silent	c.1188	p.R396	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
PTCH1	5727	genome.wustl.edu	37	9	98278972	98278972	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98278972	98278972	T	C	SNP	PTCH1	NM_001083603	human	genbank	57_37b	-1	reviewed	missense	c.131	p.E44G	0.829	NULL	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
PTPRO	5800	genome.wustl.edu	37	12	15673153	15673153	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	15673153	15673153	C	A	SNP	PTPRO	NM_030667	human	genbank	57_37b	+1	reviewed	missense	c.1798	p.P600T	1.000	HMMSmart_SM00060,superfamily_Fibronectin type III	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PUS10	150962	genome.wustl.edu	37	2	61175203	61175203	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61175203	61175203	G	C	SNP	PUS10	NM_144709	human	genbank	57_37b	-1	validated	missense	c.1426	p.L476V	1.000	NULL	NULL	-	no_errors	
RNF182	221687	genome.wustl.edu	37	6	13977498	13977498	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	13977498	13977498	A	C	SNP	RNF182	NM_152737	human	genbank	57_37b	+1	validated	missense	c.148	p.K50Q	1.000	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
RPS6KA4	8986	genome.wustl.edu	37	11	64137029	64137029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64137029	64137029	G	A	SNP	RPS6KA4	NM_003942	human	genbank	57_37b	+1	reviewed	missense	c.1540	p.V514M	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ODR_DC_2_1,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
SCN10A	6336	genome.wustl.edu	37	3	38768529	38768529	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38768529	38768529	G	T	SNP	SCN10A	NM_006514	human	genbank	57_37b	-1	validated	missense	c.2655	p.F885L	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors	
SCN4A	6329	genome.wustl.edu	37	17	62034711	62034711	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62034711	62034711	G	A	SNP	SCN4A	NM_000334	human	genbank	57_37b	-1	reviewed	silent	c.2187	p.C729	0.981	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors	
SIRT5	23408	genome.wustl.edu	37	6	13599264	13599264	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	13599264	13599264	G	C	SNP	SIRT5	NM_012241	human	genbank	57_37b	+1	reviewed	silent	c.618	p.R206	1.000	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	-	no_errors	
SLC27A4	10999	genome.wustl.edu	37	9	131105549	131105549	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131105549	131105549	C	A	SNP	SLC27A4	ENST00000339595	human	ensembl	57_37b	+1	known	missense	c.220	p.Q74K	0.968	NULL	superfamily_SSF56801,HMMPfam_AMP-binding	-	no_errors	
SLC47A1	55244	genome.wustl.edu	37	17	19452969	19452969	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	19452969	19452969	G	A	SNP	SLC47A1	NM_018242	human	genbank	57_37b	+1	validated	silent	c.477	p.T159	0.913	HMMPfam_MatE	HMMPfam_MatE	-	no_errors	
SND1	27044	genome.wustl.edu	37	7	127731927	127731927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	127731927	127731927	C	T	SNP	SND1	NM_014390	human	genbank	57_37b	+1	validated	silent	c.2661	p.S887	0.884	superfamily_Staphylococal_nuclease_OB-fold,HMMPfam_SNase	PatternScan_TNASE_1,superfamily_Staphylococal_nuclease_OB-fold,HMMSmart_SNc,HMMPfam_SNase,PatternScan_TNASE_2,HMMPfam_TUDOR,HMMSmart_TUDOR	-	no_errors	
SOX12	6666	genome.wustl.edu	37	20	307342	307342	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	307342	307342	G	T	SNP	SOX12	NM_006943	human	genbank	57_37b	+1	reviewed	silent	c.774	p.L258	0.997	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
SYNE1	23345	genome.wustl.edu	37	6	152639373	152639373	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152639373	152639373	C	A	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	missense	c.16415	p.C5472F	0.999	HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors	
SYNE1	23345	genome.wustl.edu	37	6	152716678	152716678	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152716678	152716678	A	T	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	missense	c.7685	p.M2562K	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors	
TIPIN	54962	genome.wustl.edu	37	15	66644500	66644500	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66644500	66644500	A	G	SNP	TIPIN	NM_017858	human	genbank	57_37b	-1	validated	missense	c.179	p.V60A	1.000	NULL	HMMPfam_Swi3	-	no_errors	
TLL1	7092	genome.wustl.edu	37	4	166913988	166913988	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	166913988	166913988	C	T	SNP	TLL1	NM_012464	human	genbank	57_37b	+1	reviewed	nonsense	c.313	p.R105*	1.000	NULL	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMPfam_EGF_CA,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF"	-	no_errors	
TLL2	7093	genome.wustl.edu	37	10	98146742	98146742	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	98146742	98146742	T	C	SNP	TLL2	NM_012465	human	genbank	57_37b	-1	reviewed	missense	c.1820	p.Y607C	0.987	HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196,PatternScan_EGF_2	PatternScan_EGF_1,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Astacin,PatternScan_ZINC_PROTEASE,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF	-	no_errors	
TM2D2	83877	genome.wustl.edu	37	8	38852949	38852951	+	In_Frame_Del	DEL	ATC	ATC	-	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	ATC	ATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38852949	38852951	ATC	-	DEL	TM2D2	NM_001024380	human	genbank	57_37b	-1	validated	in_frame_del	c.74_72	p.M24in_frame_del	0.000:0.000:0.000	NULL	HMMPfam_TM2	(deletion:cds_exon[38852837,38853022])	no_errors	
TM6SF2	53345	genome.wustl.edu	37	19	19381141	19381141	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19381141	19381141	G	A	SNP	TM6SF2	ENST00000431465	human	ensembl	57_37b	-1	known	nonsense	c.310	p.R104*	0.000	NULL	NULL	-	no_errors	
TMEM132C	92293	genome.wustl.edu	37	12	129178526	129178526	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129178526	129178526	C	T	SNP	TMEM132C	NM_001136103	human	genbank	57_37b	+1	provisional	silent	c.1266	p.D422	1.000	NULL	NULL	-	no_errors	
TNRC6A	27327	genome.wustl.edu	37	16	24801817	24801817	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24801817	24801817	C	A	SNP	TNRC6A	NM_014494	human	genbank	57_37b	+1	reviewed	missense	c.1854	p.N618K	0.995	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579364	7579365	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579364	7579365	CC	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.323_322	p.G108fs	0.910:0.925	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7579312,7579590])	no_errors	
UGT1A10	54575	genome.wustl.edu	37	2	234545725	234545725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234545725	234545725	C	T	SNP	UGT1A10	NM_019075	human	genbank	57_37b	+1	reviewed	missense	c.557	p.P186L	0.720	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
UGT2B15	7366	genome.wustl.edu	37	4	69536304	69536304	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69536304	69536304	C	A	SNP	UGT2B15	NM_001076	human	genbank	57_37b	-1	validated	silent	c.33	p.L11	0.997	NULL	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
UNC93B1	81622	genome.wustl.edu	37	11	67766699	67766699	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67766699	67766699	C	A	SNP	UNC93B1	ENST00000227471	human	ensembl	57_37b	-1	known	missense	c.631	p.G211C	1.000	NULL	NULL	-	no_errors	
USH2A	7399	genome.wustl.edu	37	1	216371845	216371845	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216371845	216371845	T	G	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.3893	p.Q1298P	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
USP27X	389856	genome.wustl.edu	37	X	49645615	49645615	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49645615	49645615	C	G	SNP	USP27X	NM_001145073	human	genbank	57_37b	+1	provisional	silent	c.705	p.G235	0.998	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VNN2	8875	genome.wustl.edu	37	6	133078858	133078858	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	133078858	133078858	G	C	SNP	VNN2	NM_004665	human	genbank	57_37b	-1	reviewed	missense	c.165	p.N55K	1.000	superfamily_Ntlse/CNhydtse	superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase	-	no_errors	
WNK2	65268	genome.wustl.edu	37	9	96051807	96051807	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	96051807	96051807	G	C	SNP	WNK2	NM_006648	human	genbank	57_37b	+1	reviewed	missense	c.4771	p.D1591H	0.088	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
WNT10B	7480	genome.wustl.edu	37	12	49362067	49362067	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49362067	49362067	C	T	SNP	WNT10B	NM_003394	human	genbank	57_37b	-1	reviewed	missense	c.373	p.A125T	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors	
ZIM2	23619	genome.wustl.edu	37	19	57286770	57286770	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57286770	57286770	T	C	SNP	ZIM2	NM_015363	human	genbank	57_37b	-1	reviewed	silent	c.870	p.R290	0.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF214	7761	genome.wustl.edu	37	11	7021508	7021508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7021508	7021508	G	A	SNP	ZNF214	NM_013249	human	genbank	57_37b	-1	validated	missense	c.1406	p.P469L	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors	
ZNF598	90850	genome.wustl.edu	37	16	2050140	2050140	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2050140	2050140	C	A	SNP	ZNF598	ENST00000431526	human	ensembl	57_37b	-1	known	silent	c.1410	p.P470	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF791	163049	genome.wustl.edu	37	19	12739378	12739378	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AR-A1AH-01	TCGA-AR-A1AH-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12739378	12739378	A	G	SNP	ZNF791	NM_153358	human	genbank	57_37b	+1	validated	silent	c.1035	p.V345	0.001	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
