Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
CACNA2D3	55799	genome.wustl.edu	37	3	55107522	55107522	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	55107522	55107522	T	C	SNP	CACNA2D3	NM_018398	human	genbank	57_37b	+1	reviewed	missense	c.3038	p.V1013A	1.000	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors	
CCDC146	57639	genome.wustl.edu	37	7	76889257	76889270	+	Splice_Site	DEL	GTGTGTGTGTGTGT	GTGTGTGTGTGTGT	-	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	GTGTGTGTGTGTGT	GTGTGTGTGTGTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76889257	76889270	GTGTGTGTGTGTGT	-	DEL	CCDC146	ENST00000415740	human	ensembl	57_37b	+1	known	splice_site_del	c.1+1_14	e0+1	0.002:0.003:0.004:0.005:0.005:0.005:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	(deletion:intron[76889257,76889284])	no_errors	
COL2A1	1280	genome.wustl.edu	37	12	48370883	48370883	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48370883	48370883	A	C	SNP	COL2A1	NM_001844	human	genbank	57_37b	-1	reviewed	splice_site	c.3327+2	e47+2	1.000	-	-	-	no_errors	
E2F2	1870	genome.wustl.edu	37	1	23847527	23847527	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	23847527	23847527	C	T	SNP	E2F2	NM_004091	human	genbank	57_37b	-1	reviewed	silent	c.615	p.G205	1.000	NULL	superfamily_SSF46785,HMMPfam_E2F_TDP	-	no_errors	
ENSG00000234719	0	genome.wustl.edu	37	16	12021477	12021477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	12021477	12021477	G	A	SNP	ENSG00000234719	ENST00000399147	human	ensembl	57_37b	-1	known	missense	c.896	p.A299V	0.152	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors	
FAM122C	159091	genome.wustl.edu	37	X	133955536	133955536	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	133955536	133955536	G	A	SNP	FAM122C	ENST00000370786	human	ensembl	57_37b	+1	known	missense	c.227	p.R76H	0.000	NULL	NULL	-	no_errors	
FBXO40	51725	genome.wustl.edu	37	3	121342188	121342188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121342188	121342188	G	A	SNP	FBXO40	NM_016298	human	genbank	57_37b	+1	validated	missense	c.1912	p.E638K	0.962	superfamily_F-box domain	superfamily_TRAF domain-like,superfamily_F-box domain,HMMPfam_F-box	-	no_errors	
GPS2	2874	genome.wustl.edu	37	17	7217447	7217447	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7217447	7217447	G	A	SNP	GPS2	NM_004489	human	genbank	57_37b	-1	reviewed	nonsense	c.349	p.Q117*	1.000	NULL	NULL	-	no_errors	
LLGL1	3996	genome.wustl.edu	37	17	18145296	18145296	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18145296	18145296	C	T	SNP	LLGL1	NM_004140	human	genbank	57_37b	+1	reviewed	silent	c.2865	p.R955	0.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_LLGL,HMMPfam_WD40	-	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	12032570	12032571	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12032570	12032571	-	TC	INS	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1006_1007	p.S339fs	1.000:1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MLLT4	4301	genome.wustl.edu	37	6	168289974	168289974	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168289974	168289974	T	G	SNP	MLLT4	NM_001040001	human	genbank	57_37b	+1	validated	nonsense	c.974	p.L325*	1.000	HMMPfam_RA,HMMSmart_RA	HMMPfam_RA,HMMSmart_RA,superfamily_SSF54236,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors	
MYOM3	127294	genome.wustl.edu	37	1	24390618	24390618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24390618	24390618	G	A	SNP	MYOM3	NM_152372	human	genbank	57_37b	-1	validated	missense	c.3566	p.A1189V	0.980	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_EF_HAND_1,HMMPfam_ig	-	no_errors	
NAPRT1	93100	genome.wustl.edu	37	8	144657391	144657391	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144657391	144657391	T	G	SNP	NAPRT1	NM_145201	human	genbank	57_37b	-1	validated	silent	c.1416	p.P472	0.146	NULL	superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like,HMMPfam_NAPRTase	-	no_errors	
NUMBL	9253	genome.wustl.edu	37	19	41183152	41183152	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41183152	41183152	G	C	SNP	NUMBL	NM_004756	human	genbank	57_37b	-1	validated	missense	c.715	p.P239A	0.000	NULL	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,HMMPfam_NumbF	-	no_errors	
OPA3	80207	genome.wustl.edu	37	19	46057081	46057081	+	Silent	SNP	A	A	G	rs3826860	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46057081	46057081	A	G	SNP	OPA3	NM_025136	human	genbank	57_37b	-1	reviewed	silent	c.231	p.A77	0.809	HMMPfam_OPA3	HMMPfam_OPA3	-		
PCDH12	51294	genome.wustl.edu	37	5	141334577	141334577	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141334577	141334577	T	G	SNP	PCDH12	NM_016580	human	genbank	57_37b	-1	reviewed	missense	c.2840	p.N947T	1.000	NULL	superfamily_Cadherin,HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PDCD11	22984	genome.wustl.edu	37	10	105200238	105200238	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105200238	105200238	A	T	SNP	PDCD11	NM_014976	human	genbank	57_37b	+1	validated	missense	c.4340	p.Q1447L	0.191	NULL	superfamily_Nucleic_acid_OB,HMMSmart_S1,HMMPfam_S1,superfamily_SSF48452,HMMSmart_HAT	-	no_errors	
PLA2G15	23659	genome.wustl.edu	37	16	68293055	68293055	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68293055	68293055	A	G	SNP	PLA2G15	NM_012320	human	genbank	57_37b	+1	reviewed	missense	c.734	p.N245S	1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_LACT	superfamily_alpha/beta-Hydrolases,HMMPfam_LACT	-	no_errors	
RPP30	10556	genome.wustl.edu	37	10	92656100	92656100	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	92656100	92656100	C	T	SNP	RPP30	NM_001104546	human	genbank	57_37b	+1	validated	silent	c.648	p.D216	1.000	superfamily_PHP domain-like,HMMPfam_RNase_P_p30	superfamily_PHP domain-like,HMMPfam_RNase_P_p30	-	no_errors	
SLC25A22	79751	genome.wustl.edu	37	11	793561	793561	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	793561	793561	G	A	SNP	SLC25A22	NM_024698	human	genbank	57_37b	-1	provisional	silent	c.261	p.N87	0.997	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
SLC9A10	285335	genome.wustl.edu	37	3	111901058	111901058	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111901058	111901058	G	C	SNP	SLC9A10	NM_183061	human	genbank	57_37b	-1	validated	missense	c.2571	p.I857M	0.012	NULL	HMMPfam_Na_H_Exchanger,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_WD_REPEATS_1,superfamily_cAMP-binding domain-like,HMMPfam_cNMP_binding	-	no_errors	
TUBGCP5	114791	genome.wustl.edu	37	15	22866738	22866738	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22866738	22866738	G	A	SNP	TUBGCP5	NM_001102610	human	genbank	57_37b	+1	validated	missense	c.2350	p.V784I	1.000	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors	
UNC45B	146862	genome.wustl.edu	37	17	33504550	33504550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33504550	33504550	G	A	SNP	UNC45B	NM_173167	human	genbank	57_37b	+1	validated	missense	c.2182	p.D728N	1.000	superfamily_ARM repeat	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_ARM repeat,HMMSmart_SM00185	-	no_errors	
ZNF511	118472	genome.wustl.edu	37	10	135125374	135125374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AU-01	TCGA-AR-A1AU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135125374	135125374	G	A	SNP	ZNF511	ENST00000359035	human	ensembl	57_37b	+1	known	missense	c.709	p.V237I	0.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
